Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 AC154314.2-201ENSMUST00000223677 3502 ntBASIC11.64□□□□□ -0.55
Lima1Q9ERG0 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Lima1Q9ERG0 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Gm7642-201ENSMUST00000216345 1809 ntBASIC11.63□□□□□ -0.55
Lima1Q9ERG0 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Prss57-203ENSMUST00000169684 2841 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Gm25043-201ENSMUST00000158604 212 ntBASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Olfr284-202ENSMUST00000206647 966 ntBASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Gm43622-201ENSMUST00000200140 2019 ntBASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Lima1Q9ERG0 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Gm11439-201ENSMUST00000118598 409 ntBASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Gm13297-201ENSMUST00000120205 934 ntBASIC11.62□□□□□ -0.55
Lima1Q9ERG0 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Gm29396-201ENSMUST00000185659 716 ntBASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Gm42693-201ENSMUST00000196779 631 ntBASIC11.62□□□□□ -0.55
Lima1Q9ERG0 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Gm5950-201ENSMUST00000213337 772 ntBASIC11.62□□□□□ -0.55
Lima1Q9ERG0 AC154404.1-201ENSMUST00000223601 2077 ntBASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Ackr3-201ENSMUST00000065587 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Lima1Q9ERG0 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Lima1Q9ERG0 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms