Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Gm13035-201ENSMUST00000117496 342 ntBASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Gm12501-201ENSMUST00000119163 529 ntBASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Gm13461-201ENSMUST00000120980 662 ntBASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Gm11450-201ENSMUST00000121144 333 ntBASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Gm38151-201ENSMUST00000195085 289 ntBASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Gm18065-201ENSMUST00000221395 526 ntBASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 AC113441.2-201ENSMUST00000221538 1468 ntBASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Erich3-203ENSMUST00000189969 3460 ntBASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Atg4aQ8C9S8 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Gm8459-201ENSMUST00000162504 760 ntBASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Gm34767-201ENSMUST00000191813 1062 ntBASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Gm4959-201ENSMUST00000197271 1044 ntBASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Gm9129-201ENSMUST00000218173 1689 ntBASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Gm10288-201ENSMUST00000084614 537 ntBASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Atg4aQ8C9S8 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Atg4aQ8C9S8 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Atg4aQ8C9S8 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Atg4aQ8C9S8 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Atg4aQ8C9S8 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Atg4aQ8C9S8 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Atg4aQ8C9S8 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Atg4aQ8C9S8 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Atg4aQ8C9S8 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
Atg4aQ8C9S8 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Atg4aQ8C9S8 Gm17230-201ENSMUST00000171194 3942 ntBASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Gm7851-201ENSMUST00000117574 323 ntBASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Gm14071-201ENSMUST00000117817 509 ntBASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Gm15595-201ENSMUST00000120840 961 ntBASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Gm7848-201ENSMUST00000210739 718 ntBASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 AC159747.1-201ENSMUST00000219903 265 ntBASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 AC112945.1-201ENSMUST00000226413 514 ntBASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Gm9785-201ENSMUST00000062642 1006 ntBASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Gm44573-201ENSMUST00000191753 2370 ntBASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Atg4aQ8C9S8 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms