Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm22711-201ENSMUST00000116890 133 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm12029-201ENSMUST00000120073 832 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm3150-201ENSMUST00000166418 204 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm12407-201ENSMUST00000180219 324 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm9136-201ENSMUST00000193368 454 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm43852-201ENSMUST00000202098 917 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm45550-201ENSMUST00000209380 946 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 AC135469.1-201ENSMUST00000225984 772 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm1840-201ENSMUST00000051687 1432 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 CT025624.1-201ENSMUST00000224007 2700 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Gm44999-201ENSMUST00000207456 1493 ntBASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Ubfd1Q78JW9 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 n-R5s64-201ENSMUST00000102019 119 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Gm14585-201ENSMUST00000120713 634 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Gm24844-201ENSMUST00000158679 127 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Gm6548-201ENSMUST00000167498 1165 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Ighv5-11-201ENSMUST00000193354 371 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 A430050A11Rik-201ENSMUST00000195348 646 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 AC141438.2-201ENSMUST00000215068 271 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 AC115122.1-201ENSMUST00000224850 1040 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 AC171241.1-201ENSMUST00000228144 1166 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 AC159103.1-201ENSMUST00000228325 429 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 AC135114.1-201ENSMUST00000228682 270 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Gm9387-201ENSMUST00000098624 1320 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Gm14150-201ENSMUST00000122404 1354 ntBASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Ubfd1Q78JW9 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms