Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Man2b2-201ENSMUST00000031002 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Gm11478-201ENSMUST00000117851 599 ntBASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Gm12490-201ENSMUST00000120255 560 ntBASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Derl2-206ENSMUST00000143850 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Gm7561-201ENSMUST00000211203 886 ntBASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Gm807-202ENSMUST00000224929 408 ntBASIC11.05□□□□□ -0.64
Trim40Q3UWA4 AC022775.2-201ENSMUST00000227885 646 ntBASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Exoc3l4-201ENSMUST00000072646 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Dgkh-202ENSMUST00000226342 15261 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Dennd1c-201ENSMUST00000011623 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Trim40Q3UWA4 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Zfp30-202ENSMUST00000122387 3342 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 AC166359.1-201ENSMUST00000220243 1871 ntBASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Slc9a8-201ENSMUST00000047815 4521 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Dopey2-207ENSMUST00000227156 7340 ntBASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 4732491K20Rik-201ENSMUST00000181774 3142 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Gm12502-201ENSMUST00000120197 444 ntBASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Gm45925-201ENSMUST00000218882 744 ntBASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Cd6-202ENSMUST00000039043 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Tas1r2-202ENSMUST00000166773 2524 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Wdr78-203ENSMUST00000106868 4045 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Baiap3-206ENSMUST00000182825 3862 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Trim40Q3UWA4 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim40Q3UWA4 Flad1-204ENSMUST00000129308 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Trim40Q3UWA4 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 52.1 ms