Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Gm38385-201ENSMUST00000194454 2351 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Olfr183-202ENSMUST00000206303 1862 ntAPPRIS P1 TSL 3 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 CU062626.3-201ENSMUST00000225522 1411 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Gm5605-201ENSMUST00000208940 1305 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Gm14417-201ENSMUST00000120036 1074 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 Mup-ps15-201ENSMUST00000121741 539 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 4930519D14Rik-201ENSMUST00000151471 1137 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Gm6182-201ENSMUST00000156439 1208 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 Gm7289-201ENSMUST00000168993 734 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 Gm20641-201ENSMUST00000176069 615 ntTSL 3 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Vmn1r155-201ENSMUST00000177632 924 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Vmn1r137-201ENSMUST00000177884 924 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Vmn1r130-201ENSMUST00000177936 924 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Vmn1r107-201ENSMUST00000179079 924 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Vmn1r165-201ENSMUST00000179594 924 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
Hoxd3P09027 C920009B18Rik-203ENSMUST00000181643 1004 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 Mpzl1-203ENSMUST00000191818 853 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 9530003O04Rik-201ENSMUST00000192663 908 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 Gm18752-202ENSMUST00000193627 587 ntTSL 3 BASIC9.43□□□□□ -0.9
Hoxd3P09027 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Gm19175-201ENSMUST00000199895 916 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 Gm9445-201ENSMUST00000207454 1285 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Gm33501-201ENSMUST00000209257 1193 ntTSL 5 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC9.43□□□□□ -0.9
Hoxd3P09027 AC159205.5-202ENSMUST00000224849 386 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 AC154643.1-201ENSMUST00000225643 625 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 CT025694.1-201ENSMUST00000226188 934 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Olfr811-201ENSMUST00000076437 960 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Rps25-201ENSMUST00000080300 1280 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
Hoxd3P09027 AC159195.1-201ENSMUST00000225867 2086 ntBASIC9.43□□□□□ -0.9
Hoxd3P09027 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
Hoxd3P09027 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hoxd3P09027 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC9.42□□□□□ -0.9
Hoxd3P09027 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC9.42□□□□□ -0.9
Hoxd3P09027 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC9.42□□□□□ -0.9
Hoxd3P09027 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC9.42□□□□□ -0.9
Hoxd3P09027 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.9
Hoxd3P09027 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Gm23912-201ENSMUST00000104687 87 ntBASIC9.42□□□□□ -0.9
Hoxd3P09027 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC9.42□□□□□ -0.9
Hoxd3P09027 Gm12670-201ENSMUST00000123606 576 ntTSL 2 BASIC9.42□□□□□ -0.9
Hoxd3P09027 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC9.42□□□□□ -0.9
Hoxd3P09027 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Hoxd3P09027 Gm28071-201ENSMUST00000190355 478 ntBASIC9.42□□□□□ -0.9
Hoxd3P09027 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC9.42□□□□□ -0.9
Hoxd3P09027 Gm43177-201ENSMUST00000197032 1107 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms