Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Cpsf3Q9QXK7 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC12.7□□□□□ -0.38
Cpsf3Q9QXK7 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.7□□□□□ -0.38
Cpsf3Q9QXK7 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC12.7□□□□□ -0.38
Cpsf3Q9QXK7 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Cpsf3Q9QXK7 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cpsf3Q9QXK7 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cpsf3Q9QXK7 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Zfp125-201ENSMUST00000079237 2488 ntBASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Gm43773-201ENSMUST00000198548 2162 ntBASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Gm37835-201ENSMUST00000193305 361 ntBASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Gm5852-201ENSMUST00000194119 1021 ntBASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Gm45909-201ENSMUST00000212413 1031 ntBASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Gm7940-201ENSMUST00000218195 769 ntBASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 AC134860.1-201ENSMUST00000224867 660 ntBASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Ginm1-202ENSMUST00000065124 300 ntBASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cpsf3Q9QXK7 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Gm45113-201ENSMUST00000207518 165 ntBASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cpsf3Q9QXK7 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Gm43760-201ENSMUST00000202120 3015 ntBASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Gm44241-201ENSMUST00000203230 1662 ntBASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Gm9129-201ENSMUST00000218173 1689 ntBASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 AC122840.1-201ENSMUST00000220915 3334 ntBASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Gm8146-201ENSMUST00000192106 1847 ntBASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Cpsf3Q9QXK7 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms