Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Rpgr-202ENSMUST00000072393 2380 ntAPPRIS ALT2 TSL 2 BASIC9.41□□□□□ -0.9
Smco4Q9JIS3 Tmem33-201ENSMUST00000037918 6247 ntAPPRIS P3 TSL 1 (best) BASIC9.41□□□□□ -0.9
Smco4Q9JIS3 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
Smco4Q9JIS3 Pcdh15-233ENSMUST00000191709 5346 ntAPPRIS ALT2 TSL 5 BASIC9.41□□□□□ -0.9
Smco4Q9JIS3 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Erbb4-202ENSMUST00000121473 12037 ntAPPRIS P2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Zzef1-201ENSMUST00000069395 11150 ntAPPRIS P2 TSL 5 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Pld1-201ENSMUST00000067757 4804 ntAPPRIS P2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Pde1c-201ENSMUST00000044505 3907 ntAPPRIS P4 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Zeb2-203ENSMUST00000076836 3913 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Ctnnd1-205ENSMUST00000111670 5047 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Camk2b-210ENSMUST00000109815 3780 ntAPPRIS P2 TSL 5 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Zfp940-202ENSMUST00000108223 2560 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Aktip-203ENSMUST00000120349 2153 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 AC101945.2-201ENSMUST00000227886 1377 ntBASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Vipas39-202ENSMUST00000072744 2524 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Mgll-204ENSMUST00000113585 3676 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Itih3-205ENSMUST00000227995 2100 ntAPPRIS ALT2 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Plxna3-201ENSMUST00000004326 6943 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Gm44152-201ENSMUST00000205007 1691 ntBASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Dcaf12l1-202ENSMUST00000115056 3495 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 AC173210.1-201ENSMUST00000222341 1131 ntBASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Gfm2-202ENSMUST00000042084 3074 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 A130010J15Rik-205ENSMUST00000178744 3782 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Gckr-202ENSMUST00000201166 2272 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Clasp1-208ENSMUST00000187713 5367 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
Smco4Q9JIS3 Sorbs1-201ENSMUST00000099466 2223 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Gm37031-201ENSMUST00000195487 2530 ntBASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Taf3-204ENSMUST00000114909 4897 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Ap3b2-205ENSMUST00000152355 3168 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Olfr1415-202ENSMUST00000204009 2815 ntAPPRIS P1 TSL 3 BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Snd1-201ENSMUST00000001460 3482 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Zfp956-201ENSMUST00000101445 2761 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Jarid2-208ENSMUST00000173246 5997 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Acsl4-201ENSMUST00000033634 5280 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
Smco4Q9JIS3 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Piwil1-202ENSMUST00000195959 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Itgad-201ENSMUST00000033051 3965 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Hjurp-201ENSMUST00000054674 4878 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Ccdc136-202ENSMUST00000115275 3279 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Ddr1-201ENSMUST00000003628 3802 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Gm13332-201ENSMUST00000120451 1398 ntBASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Mthfd1l-203ENSMUST00000120585 3687 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Cln3-204ENSMUST00000116269 2487 ntAPPRIS P2 TSL 5 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Ywhaz-201ENSMUST00000022894 3288 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Gm18733-201ENSMUST00000173950 856 ntBASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Gm6439-201ENSMUST00000199849 862 ntBASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 AC154846.1-201ENSMUST00000226278 862 ntBASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Gm24136-201ENSMUST00000083374 165 ntBASIC9.39□□□□□ -0.91
Smco4Q9JIS3 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms