Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm37513-201ENSMUST00000194830 2268 ntBASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Gm38378-201ENSMUST00000195153 2268 ntBASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Gm1995-201ENSMUST00000220838 2602 ntBASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC11.02□□□□□ -0.65
Cdc40Q9DC48 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Megf8-201ENSMUST00000128119 10040 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Wipf2-201ENSMUST00000037480 7011 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Gm43447-201ENSMUST00000198471 1535 ntBASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Gm12036-201ENSMUST00000120008 530 ntBASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Gm22334-201ENSMUST00000158070 133 ntBASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Gm34767-201ENSMUST00000191813 1062 ntBASIC11.01□□□□□ -0.65
Cdc40Q9DC48 AY036118-201ENSMUST00000200021 923 ntBASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Gm44100-201ENSMUST00000204329 436 ntBASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 S1pr2-201ENSMUST00000054197 6394 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Unc79-202ENSMUST00000101099 8874 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Gm7537-201ENSMUST00000221660 1414 ntBASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cdc40Q9DC48 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Cdc40Q9DC48 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Cdc40Q9DC48 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC11□□□□□ -0.65
Cdc40Q9DC48 Gm5847-201ENSMUST00000178959 1595 ntBASIC11□□□□□ -0.65
Cdc40Q9DC48 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Cdc40Q9DC48 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Ankrd31-203ENSMUST00000208758 5859 ntTSL 5 BASIC11□□□□□ -0.65
Cdc40Q9DC48 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Cdc40Q9DC48 Gm12380-201ENSMUST00000119012 544 ntBASIC11□□□□□ -0.65
Cdc40Q9DC48 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Cdc40Q9DC48 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC11□□□□□ -0.65
Cdc40Q9DC48 Gm37666-201ENSMUST00000194110 866 ntBASIC11□□□□□ -0.65
Cdc40Q9DC48 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC11□□□□□ -0.65
Cdc40Q9DC48 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC11□□□□□ -0.65
Cdc40Q9DC48 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC11□□□□□ -0.65
Cdc40Q9DC48 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Cdc40Q9DC48 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Cdc40Q9DC48 Gm5525-201ENSMUST00000190438 1312 ntBASIC11□□□□□ -0.65
Cdc40Q9DC48 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cdc40Q9DC48 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC11□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms