Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Gm4900-201ENSMUST00000222046 1628 ntBASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Usp40Q8BWR4 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
Usp40Q8BWR4 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Gm15744-201ENSMUST00000161734 213 ntBASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Gm7741-201ENSMUST00000181445 989 ntBASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Gm9873-201ENSMUST00000063891 1097 ntBASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Usp40Q8BWR4 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 1600010M07Rik-202ENSMUST00000188662 654 ntTSL 2 BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Gm5100-201ENSMUST00000195631 589 ntBASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Gm37859-201ENSMUST00000195529 2173 ntBASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Gm17213-201ENSMUST00000165161 1360 ntBASIC16.13■□□□□ 0.17
Usp40Q8BWR4 AC164702.1-201ENSMUST00000220135 2212 ntBASIC16.13■□□□□ 0.17
Usp40Q8BWR4 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Gm37600-201ENSMUST00000193764 3292 ntBASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Gm25766-201ENSMUST00000104101 131 ntBASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Gm3793-201ENSMUST00000204973 672 ntBASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Gm23680-201ENSMUST00000083162 164 ntBASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Gm38089-201ENSMUST00000193585 1514 ntBASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Usp40Q8BWR4 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms