Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 CT030652.1-201ENSMUST00000227377 1235 ntBASIC12.25□□□□□ -0.45
Sox9Q04887 Triap1-201ENSMUST00000031508 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox9Q04887 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox9Q04887 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Sox9Q04887 Gm26035-201ENSMUST00000083065 308 ntBASIC12.25□□□□□ -0.45
Sox9Q04887 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox9Q04887 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox9Q04887 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox9Q04887 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox9Q04887 Gm27194-201ENSMUST00000175753 2936 ntBASIC12.25□□□□□ -0.45
Sox9Q04887 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sox9Q04887 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sox9Q04887 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Sox9Q04887 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Sox9Q04887 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sox9Q04887 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox9Q04887 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox9Q04887 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC12.25□□□□□ -0.45
Sox9Q04887 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sox9Q04887 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Sox9Q04887 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Sox9Q04887 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Sox9Q04887 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Sox9Q04887 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC12.24□□□□□ -0.45
Sox9Q04887 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC12.24□□□□□ -0.45
Sox9Q04887 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Gm12663-201ENSMUST00000118481 958 ntBASIC12.24□□□□□ -0.45
Sox9Q04887 Gm6322-201ENSMUST00000118789 1004 ntBASIC12.24□□□□□ -0.45
Sox9Q04887 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Sox9Q04887 Gm9166-201ENSMUST00000120293 561 ntBASIC12.24□□□□□ -0.45
Sox9Q04887 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Sox9Q04887 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC12.24□□□□□ -0.45
Sox9Q04887 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC12.24□□□□□ -0.45
Sox9Q04887 Gm11634-201ENSMUST00000154147 755 ntAPPRIS ALT2 TSL 3 BASIC12.24□□□□□ -0.45
Sox9Q04887 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Sox9Q04887 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC12.24□□□□□ -0.45
Sox9Q04887 Gm18294-201ENSMUST00000176980 1748 ntBASIC12.24□□□□□ -0.45
Sox9Q04887 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
Sox9Q04887 Nmbr-207ENSMUST00000190751 921 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Gm43807-201ENSMUST00000200678 1781 ntBASIC12.24□□□□□ -0.45
Sox9Q04887 Gm35960-201ENSMUST00000202712 767 ntBASIC12.24□□□□□ -0.45
Sox9Q04887 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC12.24□□□□□ -0.45
Sox9Q04887 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC12.24□□□□□ -0.45
Sox9Q04887 Gm20735-202ENSMUST00000212387 519 ntTSL 2 BASIC12.24□□□□□ -0.45
Sox9Q04887 AC126257.1-201ENSMUST00000213195 1536 ntBASIC12.24□□□□□ -0.45
Sox9Q04887 Gm19046-201ENSMUST00000221263 1298 ntBASIC12.24□□□□□ -0.45
Sox9Q04887 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Tsga10ip-201ENSMUST00000044527 487 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
Sox9Q04887 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sox9Q04887 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
Sox9Q04887 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Oma1-201ENSMUST00000035780 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.23□□□□□ -0.45
Sox9Q04887 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Sox9Q04887 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Sox9Q04887 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
Sox9Q04887 Gm5385-201ENSMUST00000118988 1559 ntBASIC12.23□□□□□ -0.45
Sox9Q04887 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Schip1-202ENSMUST00000169909 1517 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC12.23□□□□□ -0.45
Sox9Q04887 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Cidec-203ENSMUST00000113091 785 ntAPPRIS ALT1 TSL 3 BASIC12.23□□□□□ -0.45
Sox9Q04887 Gm11783-201ENSMUST00000119549 885 ntBASIC12.23□□□□□ -0.45
Sox9Q04887 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC12.23□□□□□ -0.45
Sox9Q04887 Zfp961-203ENSMUST00000132848 781 ntTSL 5 BASIC12.23□□□□□ -0.45
Sox9Q04887 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC12.23□□□□□ -0.45
Sox9Q04887 Gm16240-201ENSMUST00000161924 614 ntTSL 2 BASIC12.23□□□□□ -0.45
Sox9Q04887 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Gm9081-201ENSMUST00000182346 991 ntBASIC12.23□□□□□ -0.45
Sox9Q04887 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 3110009M11Rik-201ENSMUST00000208647 892 ntBASIC12.23□□□□□ -0.45
Sox9Q04887 Gm45085-201ENSMUST00000209100 441 ntBASIC12.23□□□□□ -0.45
Sox9Q04887 Gm30671-201ENSMUST00000214898 318 ntBASIC12.23□□□□□ -0.45
Sox9Q04887 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC12.23□□□□□ -0.45
Sox9Q04887 Gm7904-201ENSMUST00000217049 465 ntBASIC12.23□□□□□ -0.45
Sox9Q04887 AC134537.1-201ENSMUST00000219205 265 ntBASIC12.23□□□□□ -0.45
Sox9Q04887 Tex101-201ENSMUST00000078001 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Gm43321-201ENSMUST00000198897 2409 ntBASIC12.23□□□□□ -0.45
Sox9Q04887 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
Sox9Q04887 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC12.23□□□□□ -0.45
Sox9Q04887 Gm42706-201ENSMUST00000199733 1910 ntBASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms