Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Rfx1P48377 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Gm29358-202ENSMUST00000187941 3227 ntBASIC14.09□□□□□ -0.15
Rfx1P48377 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC14.09□□□□□ -0.15
Rfx1P48377 Gm24845-201ENSMUST00000158034 109 ntBASIC14.09□□□□□ -0.15
Rfx1P48377 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC14.09□□□□□ -0.15
Rfx1P48377 Gm2546-201ENSMUST00000182630 991 ntBASIC14.09□□□□□ -0.15
Rfx1P48377 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC14.09□□□□□ -0.15
Rfx1P48377 Gm42627-201ENSMUST00000197347 224 ntBASIC14.09□□□□□ -0.15
Rfx1P48377 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC14.09□□□□□ -0.15
Rfx1P48377 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Gm9996-201ENSMUST00000070359 913 ntBASIC14.09□□□□□ -0.15
Rfx1P48377 Gm8420-201ENSMUST00000097103 598 ntBASIC14.09□□□□□ -0.15
Rfx1P48377 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Gm19221-201ENSMUST00000221827 1477 ntBASIC14.09□□□□□ -0.15
Rfx1P48377 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC14.09□□□□□ -0.15
Rfx1P48377 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Rfx1P48377 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC14.09□□□□□ -0.15
Rfx1P48377 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Rfx1P48377 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Rfx1P48377 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Rfx1P48377 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
Rfx1P48377 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Rfx1P48377 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Rfx1P48377 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Rfx1P48377 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
Rfx1P48377 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
Rfx1P48377 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Rfx1P48377 Crot-201ENSMUST00000003720 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Gm44755-201ENSMUST00000207830 2102 ntBASIC14.08□□□□□ -0.16
Rfx1P48377 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC14.08□□□□□ -0.16
Rfx1P48377 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC14.08□□□□□ -0.16
Rfx1P48377 Gm7722-201ENSMUST00000120646 741 ntBASIC14.08□□□□□ -0.16
Rfx1P48377 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC14.08□□□□□ -0.16
Rfx1P48377 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC14.08□□□□□ -0.16
Rfx1P48377 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Rfx1P48377 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Gm43002-201ENSMUST00000200310 155 ntBASIC14.08□□□□□ -0.16
Rfx1P48377 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Rfx1P48377 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC14.08□□□□□ -0.16
Rfx1P48377 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Rfx1P48377 Glyctk-202ENSMUST00000112543 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Gm43242-201ENSMUST00000199507 1776 ntBASIC14.08□□□□□ -0.16
Rfx1P48377 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Gm36940-201ENSMUST00000194281 2036 ntBASIC14.08□□□□□ -0.16
Rfx1P48377 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC14.08□□□□□ -0.16
Rfx1P48377 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC14.08□□□□□ -0.16
Rfx1P48377 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Armc1-201ENSMUST00000029125 3673 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Rfx1P48377 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rfx1P48377 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rfx1P48377 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rfx1P48377 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Rfx1P48377 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rfx1P48377 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Rfx1P48377 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rfx1P48377 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Rfx1P48377 Gm14832-201ENSMUST00000121289 322 ntBASIC14.07□□□□□ -0.16
Rfx1P48377 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rfx1P48377 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC14.07□□□□□ -0.16
Rfx1P48377 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rfx1P48377 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Rfx1P48377 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Rfx1P48377 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC14.07□□□□□ -0.16
Rfx1P48377 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rfx1P48377 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC14.07□□□□□ -0.16
Rfx1P48377 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC14.07□□□□□ -0.16
Rfx1P48377 Gm7619-201ENSMUST00000210649 1282 ntBASIC14.07□□□□□ -0.16
Rfx1P48377 Gm19994-201ENSMUST00000217086 586 ntBASIC14.07□□□□□ -0.16
Rfx1P48377 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Rfx1P48377 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms