Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Hsd11b1-203ENSMUST00000160929 1256 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm17226-201ENSMUST00000166637 780 ntTSL 3 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Vmn1r-ps19-201ENSMUST00000177008 926 ntBASIC9.45□□□□□ -0.9
Hoxd3P09027 4931440J10Rik-201ENSMUST00000181344 891 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm27010-201ENSMUST00000182727 863 ntTSL 3 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm6657-203ENSMUST00000188791 531 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm37866-201ENSMUST00000191950 696 ntBASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm38250-202ENSMUST00000195108 462 ntTSL 3 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm5717-201ENSMUST00000198243 1062 ntBASIC9.45□□□□□ -0.9
Hoxd3P09027 Akr1c13-201ENSMUST00000021634 1262 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm35135-201ENSMUST00000219885 990 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Rnase2a-201ENSMUST00000061936 690 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Olfr854-201ENSMUST00000072419 948 ntAPPRIS P2 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm44746-201ENSMUST00000205565 1349 ntBASIC9.45□□□□□ -0.9
Hoxd3P09027 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Pigm-201ENSMUST00000052455 7554 ntAPPRIS P1 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 AC123834.1-201ENSMUST00000225346 2043 ntBASIC9.44□□□□□ -0.9
Hoxd3P09027 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC9.44□□□□□ -0.9
Hoxd3P09027 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC9.44□□□□□ -0.9
Hoxd3P09027 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Gm4909-201ENSMUST00000118749 794 ntBASIC9.44□□□□□ -0.9
Hoxd3P09027 Gm12217-201ENSMUST00000118858 696 ntBASIC9.44□□□□□ -0.9
Hoxd3P09027 0610043K17Rik-201ENSMUST00000123107 614 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC9.44□□□□□ -0.9
Hoxd3P09027 Gm15891-201ENSMUST00000127307 611 ntTSL 5 BASIC9.44□□□□□ -0.9
Hoxd3P09027 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Gm14426-201ENSMUST00000128562 249 ntTSL 3 BASIC9.44□□□□□ -0.9
Hoxd3P09027 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Mir5132-201ENSMUST00000175166 71 ntBASIC9.44□□□□□ -0.9
Hoxd3P09027 Gm9630-201ENSMUST00000178304 885 ntBASIC9.44□□□□□ -0.9
Hoxd3P09027 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC9.44□□□□□ -0.9
Hoxd3P09027 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC9.44□□□□□ -0.9
Hoxd3P09027 Gm42591-201ENSMUST00000197249 700 ntBASIC9.44□□□□□ -0.9
Hoxd3P09027 AY036118-201ENSMUST00000200021 923 ntBASIC9.44□□□□□ -0.9
Hoxd3P09027 Gm43894-201ENSMUST00000203274 688 ntBASIC9.44□□□□□ -0.9
Hoxd3P09027 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC9.44□□□□□ -0.9
Hoxd3P09027 Gm32235-202ENSMUST00000220286 898 ntTSL 5 BASIC9.44□□□□□ -0.9
Hoxd3P09027 AC117949.2-201ENSMUST00000225900 584 ntBASIC9.44□□□□□ -0.9
Hoxd3P09027 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC9.44□□□□□ -0.9
Hoxd3P09027 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Spink12-201ENSMUST00000081271 1007 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Ipcef1-202ENSMUST00000086896 1196 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC9.44□□□□□ -0.9
Hoxd3P09027 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC9.44□□□□□ -0.9
Hoxd3P09027 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
Hoxd3P09027 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC9.44□□□□□ -0.9
Hoxd3P09027 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Gm45053-201ENSMUST00000206112 2499 ntBASIC9.44□□□□□ -0.9
Hoxd3P09027 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC9.44□□□□□ -0.9
Hoxd3P09027 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hoxd3P09027 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms