Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm5380-201ENSMUST00000119296 2136 ntBASIC11.59□□□□□ -0.55
Chd3B1AR17 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Chd3B1AR17 Gm37105-201ENSMUST00000192251 2085 ntBASIC11.59□□□□□ -0.55
Chd3B1AR17 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Chd3B1AR17 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Chd3B1AR17 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC11.59□□□□□ -0.55
Chd3B1AR17 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC11.59□□□□□ -0.55
Chd3B1AR17 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Chd3B1AR17 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Chd3B1AR17 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Chd3B1AR17 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Chd3B1AR17 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Chd3B1AR17 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Chd3B1AR17 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.55
Chd3B1AR17 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.55
Chd3B1AR17 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.55
Chd3B1AR17 Gm7537-201ENSMUST00000221660 1414 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Chd3B1AR17 Gm15352-201ENSMUST00000118696 270 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 Gm15004-201ENSMUST00000119192 630 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 Gm11244-201ENSMUST00000121243 237 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC11.58□□□□□ -0.56
Chd3B1AR17 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC11.58□□□□□ -0.56
Chd3B1AR17 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC11.58□□□□□ -0.56
Chd3B1AR17 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 D9Wsu149-201ENSMUST00000214169 594 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC11.58□□□□□ -0.56
Chd3B1AR17 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Chd3B1AR17 Gm7104-201ENSMUST00000179741 2532 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC11.58□□□□□ -0.56
Chd3B1AR17 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Chd3B1AR17 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Chd3B1AR17 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
Chd3B1AR17 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Gm14314-201ENSMUST00000118225 1015 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Chd3B1AR17 n-R5s84-201ENSMUST00000122591 109 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
Chd3B1AR17 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Chd3B1AR17 AC165260.2-203ENSMUST00000224237 336 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 AC159103.1-201ENSMUST00000228325 429 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 Nupl1-206ENSMUST00000225111 2936 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC11.58□□□□□ -0.56
Chd3B1AR17 Gm9279-201ENSMUST00000223175 1606 ntBASIC11.58□□□□□ -0.56
Chd3B1AR17 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Chd3B1AR17 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Gm45199-201ENSMUST00000207640 1507 ntBASIC11.57□□□□□ -0.56
Chd3B1AR17 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Gm7114-201ENSMUST00000190159 1789 ntBASIC11.57□□□□□ -0.56
Chd3B1AR17 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Chd3B1AR17 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Gm10179-201ENSMUST00000086233 688 ntBASIC11.57□□□□□ -0.56
Chd3B1AR17 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Chd3B1AR17 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC11.57□□□□□ -0.56
Chd3B1AR17 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms