Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
Scn4aQ9ER60 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Shf-205ENSMUST00000121237 882 ntTSL 3 BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Gm13031-201ENSMUST00000140501 924 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Eef1d-217ENSMUST00000151066 704 ntTSL 5 BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Mir6930-201ENSMUST00000183859 68 ntBASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Gm3945-201ENSMUST00000196637 683 ntBASIC15.71■□□□□ 0.11
Scn4aQ9ER60 AC123061.1-201ENSMUST00000228021 999 ntBASIC15.71■□□□□ 0.11
Scn4aQ9ER60 AC163646.3-202ENSMUST00000228685 691 ntBASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 1700036A12Rik-202ENSMUST00000190053 1828 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Scn4aQ9ER60 AC125108.1-201ENSMUST00000218986 2330 ntBASIC15.71■□□□□ 0.11
Scn4aQ9ER60 Ifna6-201ENSMUST00000105146 570 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Gm15720-201ENSMUST00000117133 282 ntBASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Scgb2b25-ps-201ENSMUST00000121936 307 ntBASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Gm12976-201ENSMUST00000150171 459 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Gm12847-201ENSMUST00000156219 413 ntTSL 5 BASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Gm16552-201ENSMUST00000162348 685 ntTSL 3 BASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Ifna11-201ENSMUST00000170428 573 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Ly6l-201ENSMUST00000177479 430 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Gm26611-201ENSMUST00000181449 785 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Myo1h-206ENSMUST00000196467 1208 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Gm44658-201ENSMUST00000207965 637 ntBASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Ormdl2-203ENSMUST00000219215 1051 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Gm8960-201ENSMUST00000219787 788 ntBASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Gm36172-201ENSMUST00000219852 723 ntTSL 3 BASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Olfr1330-201ENSMUST00000094830 948 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Ifna1-201ENSMUST00000094972 570 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
Scn4aQ9ER60 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Gm17147-201ENSMUST00000164176 432 ntBASIC15.7■□□□□ 0.1
Scn4aQ9ER60 A630023A22Rik-201ENSMUST00000178958 1277 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Gm9273-201ENSMUST00000200606 715 ntBASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Gm7880-201ENSMUST00000203748 871 ntBASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Gm45893-201ENSMUST00000211899 247 ntBASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Gm6653-201ENSMUST00000218063 1288 ntBASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 AC154197.1-201ENSMUST00000225136 1382 ntBASIC15.7■□□□□ 0.1
Scn4aQ9ER60 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC15.7■□□□□ 0.1
Scn4aQ9ER60 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Zfp869-201ENSMUST00000080987 1590 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Slc25a17-201ENSMUST00000023040 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 AC122273.1-201ENSMUST00000213634 2327 ntBASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Gm7642-201ENSMUST00000216345 1809 ntBASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Gm23908-201ENSMUST00000104599 132 ntBASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Sh3bgrl3-202ENSMUST00000105879 518 ntTSL 3 BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Ccl19-ps1-201ENSMUST00000119621 327 ntBASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Gm16288-201ENSMUST00000137940 367 ntBASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Gm9574-201ENSMUST00000173127 845 ntBASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Gm17797-201ENSMUST00000182175 997 ntBASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Gm29595-202ENSMUST00000187954 466 ntTSL 3 BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Gm38301-201ENSMUST00000195573 543 ntBASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Gm5311-201ENSMUST00000203518 709 ntBASIC15.69■□□□□ 0.1
Scn4aQ9ER60 AC153929.1-201ENSMUST00000219009 303 ntBASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Rce1-203ENSMUST00000224707 1255 ntBASIC15.69■□□□□ 0.1
Scn4aQ9ER60 AC164978.2-201ENSMUST00000226645 857 ntBASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Gm11437-201ENSMUST00000050771 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Scn4aQ9ER60 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms