Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Gm15352-201ENSMUST00000118696 270 ntBASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Gm11956-201ENSMUST00000119525 512 ntBASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Gm11246-201ENSMUST00000120880 345 ntBASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Gm9463-201ENSMUST00000206707 601 ntBASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 CT485607.1-201ENSMUST00000216100 85 ntBASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Sf3b1Q99NB9 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Gm1995-201ENSMUST00000220838 2602 ntBASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 AC153505.1-201ENSMUST00000218819 1071 ntBASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Sf3b1Q99NB9 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Gm8155-201ENSMUST00000216363 1612 ntBASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Gm14585-201ENSMUST00000120713 634 ntBASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Gm8737-201ENSMUST00000122208 642 ntBASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Sf3b1Q99NB9 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms