Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Clp1Q99LI9 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC12.5□□□□□ -0.41
Clp1Q99LI9 Gm9884-201ENSMUST00000194343 1222 ntBASIC12.5□□□□□ -0.41
Clp1Q99LI9 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Gm7902-201ENSMUST00000198842 947 ntBASIC12.5□□□□□ -0.41
Clp1Q99LI9 Gm18561-201ENSMUST00000206027 804 ntBASIC12.5□□□□□ -0.41
Clp1Q99LI9 Gm46204-201ENSMUST00000219800 411 ntTSL 3 BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Gm18363-201ENSMUST00000221671 730 ntBASIC12.5□□□□□ -0.41
Clp1Q99LI9 Gm4604-201ENSMUST00000025040 390 ntBASIC12.5□□□□□ -0.41
Clp1Q99LI9 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Gm10263-201ENSMUST00000085163 300 ntBASIC12.5□□□□□ -0.41
Clp1Q99LI9 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Gm44056-201ENSMUST00000204623 1427 ntBASIC12.5□□□□□ -0.41
Clp1Q99LI9 Gm1840-201ENSMUST00000051687 1432 ntBASIC12.5□□□□□ -0.41
Clp1Q99LI9 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
Clp1Q99LI9 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Kcne2-201ENSMUST00000047383 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Gm7002-201ENSMUST00000221386 2165 ntBASIC12.5□□□□□ -0.41
Clp1Q99LI9 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Clp1Q99LI9 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 AC159195.1-201ENSMUST00000225867 2086 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Gm20052-201ENSMUST00000200831 1525 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Gm14270-201ENSMUST00000118388 846 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Gm12274-201ENSMUST00000120062 385 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Gm24248-201ENSMUST00000157321 322 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Gm8723-201ENSMUST00000166076 820 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Gm8701-201ENSMUST00000169259 874 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Gm7741-201ENSMUST00000181445 989 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Calm5-202ENSMUST00000184271 423 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Gm5982-201ENSMUST00000196234 512 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Gm7504-201ENSMUST00000201449 424 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Gm44552-201ENSMUST00000205458 1247 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 AC140375.1-201ENSMUST00000225421 694 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 AC154572.1-201ENSMUST00000226098 1204 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 n-R5s185-201ENSMUST00000083953 119 ntBASIC12.49□□□□□ -0.41
Clp1Q99LI9 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC12.49□□□□□ -0.41
Clp1Q99LI9 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Clp1Q99LI9 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Gm15968-201ENSMUST00000119342 1168 ntBASIC12.48□□□□□ -0.41
Clp1Q99LI9 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Gm14395-201ENSMUST00000120494 563 ntBASIC12.48□□□□□ -0.41
Clp1Q99LI9 Gm12702-201ENSMUST00000123258 612 ntTSL 3 BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC12.48□□□□□ -0.41
Clp1Q99LI9 Gm6114-201ENSMUST00000182472 968 ntBASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms