Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Gm37931-201ENSMUST00000194686 2866 ntBASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Setd1a-202ENSMUST00000047157 5927 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Gm7857-201ENSMUST00000117957 358 ntBASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Gm5733-201ENSMUST00000190232 939 ntBASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Mir433-201ENSMUST00000093564 124 ntBASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Atg4aQ8C9S8 Gm7841-201ENSMUST00000122108 1629 ntBASIC14.33□□□□□ -0.11
Atg4aQ8C9S8 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Atg4aQ8C9S8 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Atg4aQ8C9S8 Gm44755-201ENSMUST00000207830 2102 ntBASIC14.33□□□□□ -0.11
Atg4aQ8C9S8 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Gm12266-201ENSMUST00000120311 962 ntBASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Gm18734-201ENSMUST00000172937 808 ntBASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Gm8100-201ENSMUST00000182906 988 ntBASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Gm5369-201ENSMUST00000217499 588 ntBASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Gm21811-201ENSMUST00000096485 930 ntBASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Atg4aQ8C9S8 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 AC159308.2-201ENSMUST00000213592 2325 ntBASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 AC167022.1-201ENSMUST00000218647 1458 ntBASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Gm43075-201ENSMUST00000198613 3905 ntBASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Gm8199-201ENSMUST00000121323 823 ntBASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC14.32□□□□□ -0.12
Atg4aQ8C9S8 Gm25732-201ENSMUST00000175168 60 ntBASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms