Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Upf3aQ3ULJ3 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Upf3aQ3ULJ3 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Gm15615-201ENSMUST00000118876 198 ntBASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Gm12036-201ENSMUST00000120008 530 ntBASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Gm12628-201ENSMUST00000122193 382 ntBASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Gm23218-201ENSMUST00000158124 276 ntBASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Gm29410-201ENSMUST00000188383 694 ntBASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Gm29560-201ENSMUST00000191526 881 ntTSL 5 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 AC124457.1-201ENSMUST00000198845 120 ntBASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Gm44124-201ENSMUST00000204159 472 ntBASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Gm35625-201ENSMUST00000210416 316 ntTSL 3 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 AC164105.2-201ENSMUST00000215484 524 ntTSL 5 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC12.45□□□□□ -0.42
Upf3aQ3ULJ3 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gm14441-201ENSMUST00000121960 540 ntBASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gm6114-201ENSMUST00000182472 968 ntBASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gm5982-201ENSMUST00000196234 512 ntBASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gm3619-201ENSMUST00000219947 775 ntBASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 CT009546.1-201ENSMUST00000222573 1120 ntBASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 AC154184.3-201ENSMUST00000225620 1090 ntBASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 AC118639.2-201ENSMUST00000226289 223 ntBASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gm8522-201ENSMUST00000118416 1929 ntBASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Gm42480-201ENSMUST00000198434 2595 ntBASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Upf3aQ3ULJ3 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Upf3aQ3ULJ3 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms