Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Limch1Q3UH68 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Limch1Q3UH68 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Limch1Q3UH68 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Limch1Q3UH68 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.18
Limch1Q3UH68 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Limch1Q3UH68 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC13.95□□□□□ -0.18
Limch1Q3UH68 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm13461-201ENSMUST00000120980 662 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm18734-201ENSMUST00000172937 808 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm29615-201ENSMUST00000185371 697 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm28224-201ENSMUST00000186078 697 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm29001-201ENSMUST00000186177 697 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm28292-201ENSMUST00000186593 697 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm28101-201ENSMUST00000187608 697 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm29076-201ENSMUST00000187689 697 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm28302-201ENSMUST00000187931 697 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm28646-201ENSMUST00000188220 697 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm28205-201ENSMUST00000189177 697 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm29032-201ENSMUST00000189797 697 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm28695-201ENSMUST00000190300 697 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm37448-201ENSMUST00000192795 697 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm45118-201ENSMUST00000208928 825 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm18556-201ENSMUST00000219748 1031 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm10702-201ENSMUST00000098929 1268 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Gm18983-201ENSMUST00000222884 2729 ntBASIC13.95□□□□□ -0.18
Limch1Q3UH68 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Limch1Q3UH68 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Gm10728-201ENSMUST00000194292 1829 ntBASIC13.94□□□□□ -0.18
Limch1Q3UH68 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Gm37348-201ENSMUST00000193104 1789 ntBASIC13.94□□□□□ -0.18
Limch1Q3UH68 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Gm13611-201ENSMUST00000118269 318 ntBASIC13.94□□□□□ -0.18
Limch1Q3UH68 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Limch1Q3UH68 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC13.93□□□□□ -0.18
Limch1Q3UH68 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Limch1Q3UH68 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Limch1Q3UH68 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Limch1Q3UH68 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Limch1Q3UH68 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms