Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Kcnk10-201ENSMUST00000110113 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Gm45206-201ENSMUST00000206885 2285 ntBASIC12.53□□□□□ -0.4
Rnf40Q3U319 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Rnf40Q3U319 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC12.52□□□□□ -0.4
Rnf40Q3U319 Zfp780b-203ENSMUST00000205874 1907 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf40Q3U319 Gm15544-201ENSMUST00000118776 1531 ntBASIC12.52□□□□□ -0.4
Rnf40Q3U319 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf40Q3U319 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf40Q3U319 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf40Q3U319 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf40Q3U319 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Rnf40Q3U319 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Rnf40Q3U319 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm11877-201ENSMUST00000118921 852 ntBASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm6461-201ENSMUST00000120015 633 ntBASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm14024-201ENSMUST00000141964 560 ntTSL 2 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm16147-201ENSMUST00000162143 373 ntBASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm3760-201ENSMUST00000167475 804 ntBASIC12.52□□□□□ -0.41
Rnf40Q3U319 4930471M09Rik-201ENSMUST00000181849 1112 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm9522-201ENSMUST00000182394 926 ntBASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm27618-201ENSMUST00000183671 60 ntBASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm6652-201ENSMUST00000186414 1070 ntBASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm29405-201ENSMUST00000187204 370 ntTSL 5 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm29557-201ENSMUST00000188245 370 ntTSL 5 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm29436-202ENSMUST00000189054 1172 ntTSL 5 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm28174-201ENSMUST00000191003 370 ntTSL 5 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 2610001A08Rik-201ENSMUST00000193315 867 ntBASIC12.52□□□□□ -0.41
Rnf40Q3U319 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm19269-201ENSMUST00000211401 804 ntBASIC12.52□□□□□ -0.41
Rnf40Q3U319 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm7775-201ENSMUST00000218871 853 ntBASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm34662-202ENSMUST00000220753 603 ntTSL 5 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Olfr125-201ENSMUST00000050255 1118 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Olfr19-201ENSMUST00000057886 1142 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Gm38049-201ENSMUST00000195698 1372 ntBASIC12.52□□□□□ -0.41
Rnf40Q3U319 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Rnf40Q3U319 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 AC174678.2-201ENSMUST00000156420 3275 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Nectin4-201ENSMUST00000006578 3636 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm11439-201ENSMUST00000118598 409 ntBASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm16342-201ENSMUST00000124025 1025 ntBASIC12.51□□□□□ -0.41
Rnf40Q3U319 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm3573-201ENSMUST00000168673 898 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm3486-201ENSMUST00000169361 883 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm4181-201ENSMUST00000170249 898 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm26907-201ENSMUST00000181794 729 ntTSL 5 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 4833403J16Rik-201ENSMUST00000204490 1031 ntBASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm45579-201ENSMUST00000209367 887 ntTSL 5 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.51□□□□□ -0.41
Rnf40Q3U319 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 AC134860.5-201ENSMUST00000225071 1249 ntBASIC12.51□□□□□ -0.41
Rnf40Q3U319 Itm2b-204ENSMUST00000228637 783 ntBASIC12.51□□□□□ -0.41
Rnf40Q3U319 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Gm37613-201ENSMUST00000195677 3580 ntBASIC12.51□□□□□ -0.41
Rnf40Q3U319 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Rnf40Q3U319 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms