Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Col28a1Q2UY11 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Gm23912-201ENSMUST00000104687 87 ntBASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Gm11439-201ENSMUST00000118598 409 ntBASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 AC122371.3-201ENSMUST00000223402 1061 ntBASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Gm3287-205ENSMUST00000228893 1332 ntBASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Gm37931-201ENSMUST00000194686 2866 ntBASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Col28a1Q2UY11 AC113441.2-201ENSMUST00000221538 1468 ntBASIC11.51□□□□□ -0.57
Col28a1Q2UY11 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Gm6189-201ENSMUST00000164487 2082 ntBASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Dhrs4-202ENSMUST00000226168 828 ntBASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC11.5□□□□□ -0.57
Col28a1Q2UY11 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Gm3836-201ENSMUST00000211377 1613 ntBASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms