Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Exoc3l4-201ENSMUST00000072646 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Rfx1P48377 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Rfx1P48377 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC14.11□□□□□ -0.15
Rfx1P48377 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC14.11□□□□□ -0.15
Rfx1P48377 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Slc19a1-201ENSMUST00000105410 2347 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Gm12164-201ENSMUST00000121695 551 ntBASIC14.11□□□□□ -0.15
Rfx1P48377 Gm16379-201ENSMUST00000161469 348 ntBASIC14.11□□□□□ -0.15
Rfx1P48377 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC14.11□□□□□ -0.15
Rfx1P48377 Gm8762-201ENSMUST00000193486 339 ntBASIC14.11□□□□□ -0.15
Rfx1P48377 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC14.11□□□□□ -0.15
Rfx1P48377 AC132260.2-201ENSMUST00000224482 344 ntBASIC14.11□□□□□ -0.15
Rfx1P48377 Shoc2-201ENSMUST00000025932 4106 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC14.11□□□□□ -0.15
Rfx1P48377 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Rfx1P48377 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC14.11□□□□□ -0.15
Rfx1P48377 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Rfx1P48377 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC14.1□□□□□ -0.15
Rfx1P48377 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Mroh8-202ENSMUST00000143663 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC14.1□□□□□ -0.15
Rfx1P48377 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
Rfx1P48377 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Rfx1P48377 Gm45011-201ENSMUST00000207620 2297 ntBASIC14.1□□□□□ -0.15
Rfx1P48377 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC14.1□□□□□ -0.15
Rfx1P48377 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Rfx1P48377 Gm11478-201ENSMUST00000117851 599 ntBASIC14.1□□□□□ -0.15
Rfx1P48377 Gm15610-201ENSMUST00000120584 195 ntBASIC14.1□□□□□ -0.15
Rfx1P48377 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Gm25043-201ENSMUST00000158604 212 ntBASIC14.1□□□□□ -0.15
Rfx1P48377 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC14.1□□□□□ -0.15
Rfx1P48377 Gm7653-201ENSMUST00000214567 508 ntBASIC14.1□□□□□ -0.15
Rfx1P48377 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC14.1□□□□□ -0.15
Rfx1P48377 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC14.1□□□□□ -0.15
Rfx1P48377 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Rfx1P48377 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
Rfx1P48377 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC14.1□□□□□ -0.15
Rfx1P48377 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Rfx1P48377 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Rfx1P48377 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Gm6560-201ENSMUST00000198588 1591 ntBASIC14.09□□□□□ -0.15
Rfx1P48377 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Megf11-202ENSMUST00000093829 3652 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Rfx1P48377 Mrgprd-201ENSMUST00000062163 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 D930020B18Rik-201ENSMUST00000120642 3335 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Rfx1P48377 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Rfx1P48377 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 58.9 ms