Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC9.61□□□□□ -0.87
Cdx1P18111 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Gramd1b-213ENSMUST00000211853 2659 ntTSL 5 BASIC9.61□□□□□ -0.87
Cdx1P18111 Sh3gl2-201ENSMUST00000030212 2822 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Tyw1-202ENSMUST00000044204 4698 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Tfip11-201ENSMUST00000031288 3560 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC9.61□□□□□ -0.87
Cdx1P18111 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm45161-201ENSMUST00000207316 2263 ntBASIC9.61□□□□□ -0.87
Cdx1P18111 Htr1d-203ENSMUST00000121571 2426 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm21136-201ENSMUST00000186812 2575 ntBASIC9.61□□□□□ -0.87
Cdx1P18111 Nr1i2-201ENSMUST00000023504 2553 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm6605-201ENSMUST00000031488 2574 ntBASIC9.61□□□□□ -0.87
Cdx1P18111 Tbc1d17-201ENSMUST00000047085 8750 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Ccdc96-201ENSMUST00000060100 3585 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
Cdx1P18111 Slc6a9-202ENSMUST00000063857 3146 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Agrn-203ENSMUST00000105575 7262 ntTSL 5 BASIC9.6□□□□□ -0.87
Cdx1P18111 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Arhgef4-204ENSMUST00000159747 6514 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.87
Cdx1P18111 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Armcx6-201ENSMUST00000052431 2024 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Arhgap24-203ENSMUST00000094559 3346 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 8030423F21Rik-201ENSMUST00000064097 2851 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC9.6□□□□□ -0.87
Cdx1P18111 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC9.6□□□□□ -0.87
Cdx1P18111 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC9.6□□□□□ -0.87
Cdx1P18111 Gm13369-201ENSMUST00000119442 987 ntBASIC9.6□□□□□ -0.87
Cdx1P18111 Gm12201-201ENSMUST00000120657 1234 ntBASIC9.6□□□□□ -0.87
Cdx1P18111 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC9.6□□□□□ -0.87
Cdx1P18111 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC9.6□□□□□ -0.87
Cdx1P18111 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC9.6□□□□□ -0.87
Cdx1P18111 Gm16379-201ENSMUST00000161469 348 ntBASIC9.6□□□□□ -0.87
Cdx1P18111 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC9.6□□□□□ -0.87
Cdx1P18111 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Gm27501-201ENSMUST00000183599 107 ntBASIC9.6□□□□□ -0.87
Cdx1P18111 Gm8762-201ENSMUST00000193486 339 ntBASIC9.6□□□□□ -0.87
Cdx1P18111 Gm44364-201ENSMUST00000198368 141 ntBASIC9.6□□□□□ -0.87
Cdx1P18111 Gm42929-201ENSMUST00000198374 1286 ntBASIC9.6□□□□□ -0.87
Cdx1P18111 Gm43118-201ENSMUST00000199149 775 ntBASIC9.6□□□□□ -0.87
Cdx1P18111 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC9.6□□□□□ -0.87
Cdx1P18111 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC9.6□□□□□ -0.87
Cdx1P18111 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC9.6□□□□□ -0.87
Cdx1P18111 Gm26035-201ENSMUST00000083065 308 ntBASIC9.6□□□□□ -0.87
Cdx1P18111 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
Cdx1P18111 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC9.6□□□□□ -0.87
Cdx1P18111 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Cog3-203ENSMUST00000227473 4197 ntBASIC9.6□□□□□ -0.87
Cdx1P18111 Atg14-202ENSMUST00000226299 3729 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
Cdx1P18111 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Tgfb1i1-201ENSMUST00000070656 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC9.6□□□□□ -0.87
Cdx1P18111 Hemk1-201ENSMUST00000035196 2192 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC9.6□□□□□ -0.87
Cdx1P18111 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Hmbox1-205ENSMUST00000176128 2958 ntAPPRIS ALT1 TSL 5 BASIC9.6□□□□□ -0.87
Cdx1P18111 Nfyc-204ENSMUST00000120779 2006 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
Cdx1P18111 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 Pax6-225ENSMUST00000167211 2814 ntAPPRIS P3 TSL 5 BASIC9.6□□□□□ -0.87
Cdx1P18111 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Cdx1P18111 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC9.6□□□□□ -0.87
Cdx1P18111 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Cdx1P18111 Abcb8-203ENSMUST00000115077 3074 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.87
Cdx1P18111 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
Cdx1P18111 Dcun1d2-203ENSMUST00000110839 2937 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Cdx1P18111 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Cdx1P18111 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Cdx1P18111 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Cdx1P18111 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC9.59□□□□□ -0.87
Cdx1P18111 Ap3b2-205ENSMUST00000152355 3168 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Cdx1P18111 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Cdx1P18111 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC9.59□□□□□ -0.87
Cdx1P18111 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Cdx1P18111 AC160562.2-201ENSMUST00000216374 2201 ntTSL 2 BASIC9.59□□□□□ -0.87
Cdx1P18111 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Cdx1P18111 Cit-202ENSMUST00000102560 6213 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Cdx1P18111 Rasgef1a-203ENSMUST00000203804 2183 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Cdx1P18111 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Cdx1P18111 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.87
Cdx1P18111 Gm22018-201ENSMUST00000104357 131 ntBASIC9.59□□□□□ -0.87
Cdx1P18111 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC9.59□□□□□ -0.87
Cdx1P18111 Gm12329-201ENSMUST00000120829 1007 ntBASIC9.59□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 74.8 ms