Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col1a1P11087 Gm15329-201ENSMUST00000121408 155 ntBASIC13.71□□□□□ -0.21
Col1a1P11087 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC13.71□□□□□ -0.21
Col1a1P11087 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC13.71□□□□□ -0.21
Col1a1P11087 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC13.71□□□□□ -0.21
Col1a1P11087 Gm43752-201ENSMUST00000198475 697 ntBASIC13.71□□□□□ -0.21
Col1a1P11087 Gm5340-201ENSMUST00000203733 880 ntBASIC13.71□□□□□ -0.21
Col1a1P11087 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
Col1a1P11087 AC154305.2-201ENSMUST00000225813 901 ntBASIC13.71□□□□□ -0.21
Col1a1P11087 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col1a1P11087 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col1a1P11087 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col1a1P11087 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col1a1P11087 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col1a1P11087 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col1a1P11087 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col1a1P11087 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col1a1P11087 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col1a1P11087 Gm12474-201ENSMUST00000122898 1410 ntTSL 2 BASIC13.7□□□□□ -0.22
Col1a1P11087 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
Col1a1P11087 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
Col1a1P11087 Gpcpd1-204ENSMUST00000110136 3546 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC13.7□□□□□ -0.22
Col1a1P11087 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm37324-201ENSMUST00000194500 4504 ntBASIC13.7□□□□□ -0.22
Col1a1P11087 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Col1a1P11087 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Cast-212ENSMUST00000223309 1529 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Mir453-201ENSMUST00000104732 82 ntBASIC13.7□□□□□ -0.22
Col1a1P11087 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm13278-201ENSMUST00000177771 549 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm13275-201ENSMUST00000178347 549 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm13277-201ENSMUST00000178480 549 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm13279-201ENSMUST00000178602 549 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm13289-201ENSMUST00000179158 549 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm13276-201ENSMUST00000179372 549 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm13287-201ENSMUST00000179490 549 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm26976-201ENSMUST00000182929 908 ntBASIC13.7□□□□□ -0.22
Col1a1P11087 1700017I07Rik-201ENSMUST00000184823 462 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm29261-201ENSMUST00000188535 678 ntTSL 5 BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm45085-201ENSMUST00000209100 441 ntBASIC13.7□□□□□ -0.22
Col1a1P11087 Ly86-201ENSMUST00000021860 1134 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm7525-201ENSMUST00000219425 454 ntBASIC13.7□□□□□ -0.22
Col1a1P11087 Gm2696-202ENSMUST00000220393 684 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm14005-208ENSMUST00000223654 681 ntBASIC13.7□□□□□ -0.22
Col1a1P11087 Olfr1395-201ENSMUST00000059379 954 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Col1a1P11087 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Gm20633-201ENSMUST00000176742 2831 ntBASIC13.7□□□□□ -0.22
Col1a1P11087 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Col1a1P11087 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col1a1P11087 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Col1a1P11087 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Col1a1P11087 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Col1a1P11087 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Trav11-201ENSMUST00000103585 343 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Col1a1P11087 Trav11d-201ENSMUST00000103648 342 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Col1a1P11087 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC13.69□□□□□ -0.22
Col1a1P11087 Gm11996-201ENSMUST00000117538 915 ntBASIC13.69□□□□□ -0.22
Col1a1P11087 Gm12389-201ENSMUST00000117696 418 ntBASIC13.69□□□□□ -0.22
Col1a1P11087 Gm15196-201ENSMUST00000121406 482 ntBASIC13.69□□□□□ -0.22
Col1a1P11087 Gm11960-201ENSMUST00000122068 925 ntBASIC13.69□□□□□ -0.22
Col1a1P11087 Kdm6bos-201ENSMUST00000129924 840 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC13.69□□□□□ -0.22
Col1a1P11087 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Col1a1P11087 Gm25677-201ENSMUST00000174983 72 ntBASIC13.69□□□□□ -0.22
Col1a1P11087 Gm37019-201ENSMUST00000192133 2134 ntBASIC13.69□□□□□ -0.22
Col1a1P11087 Trav11n-201ENSMUST00000200113 343 ntBASIC13.69□□□□□ -0.22
Col1a1P11087 Gm5599-201ENSMUST00000209602 788 ntBASIC13.69□□□□□ -0.22
Col1a1P11087 Gm31513-201ENSMUST00000223261 684 ntTSL 2 BASIC13.69□□□□□ -0.22
Col1a1P11087 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Bloc1s1-201ENSMUST00000026405 550 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Hddc2-201ENSMUST00000000304 858 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Tsga10ip-201ENSMUST00000044527 487 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms