Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Gm2260-201ENSMUST00000184965 657 ntBASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Gm29199-201ENSMUST00000187766 775 ntBASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Gm4959-201ENSMUST00000197271 1044 ntBASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Chmp6P0C0A3 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Gm5847-201ENSMUST00000178959 1595 ntBASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Gm15236-201ENSMUST00000117309 379 ntBASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Gm44711-201ENSMUST00000205414 1264 ntBASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Gm45186-201ENSMUST00000206874 478 ntBASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 AC153954.1-201ENSMUST00000216959 255 ntBASIC12.91□□□□□ -0.34
Chmp6P0C0A3 CT571245.2-201ENSMUST00000218421 305 ntBASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Gm43984-201ENSMUST00000204572 2864 ntBASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Chmp6P0C0A3 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Gm12997-201ENSMUST00000120207 640 ntBASIC12.9□□□□□ -0.34
Chmp6P0C0A3 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Gm24749-201ENSMUST00000157838 343 ntBASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Gstp-ps-201ENSMUST00000195526 631 ntBASIC12.9□□□□□ -0.34
Chmp6P0C0A3 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC12.9□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms