Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Brf1Q8CFK2 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC14.29□□□□□ -0.12
Brf1Q8CFK2 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Brf1Q8CFK2 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Gm16481-201ENSMUST00000119074 1227 ntBASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Gm11960-201ENSMUST00000122068 925 ntBASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Cd63-ps-202ENSMUST00000154992 717 ntBASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Gm28450-201ENSMUST00000187349 638 ntBASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Gm29199-201ENSMUST00000187766 775 ntBASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Gm38117-201ENSMUST00000194653 939 ntBASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Brf1Q8CFK2 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
Brf1Q8CFK2 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Brf1Q8CFK2 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Brf1Q8CFK2 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Brf1Q8CFK2 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Brf1Q8CFK2 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Brf1Q8CFK2 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Brf1Q8CFK2 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Brf1Q8CFK2 Gm7993-201ENSMUST00000200970 1384 ntBASIC14.27□□□□□ -0.12
Brf1Q8CFK2 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Brf1Q8CFK2 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Brf1Q8CFK2 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Brf1Q8CFK2 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Brf1Q8CFK2 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Brf1Q8CFK2 Gm23200-201ENSMUST00000104379 132 ntBASIC14.27□□□□□ -0.13
Brf1Q8CFK2 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms