Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Trim28Q62318 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC15.29■□□□□ 0.04
Trim28Q62318 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Trim28Q62318 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC15.29■□□□□ 0.04
Trim28Q62318 Gm15528-201ENSMUST00000117821 864 ntBASIC15.29■□□□□ 0.04
Trim28Q62318 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC15.29■□□□□ 0.04
Trim28Q62318 Gm23153-201ENSMUST00000175323 313 ntBASIC15.29■□□□□ 0.04
Trim28Q62318 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC15.29■□□□□ 0.04
Trim28Q62318 Gm8531-201ENSMUST00000188319 893 ntBASIC15.29■□□□□ 0.04
Trim28Q62318 Gm37826-201ENSMUST00000195329 322 ntBASIC15.29■□□□□ 0.04
Trim28Q62318 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Trim28Q62318 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trim28Q62318 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim28Q62318 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Trim28Q62318 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Trim28Q62318 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Gm37324-201ENSMUST00000194500 4504 ntBASIC15.28■□□□□ 0.04
Trim28Q62318 Gm43172-201ENSMUST00000202139 2137 ntBASIC15.28■□□□□ 0.04
Trim28Q62318 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim28Q62318 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim28Q62318 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Gm6655-201ENSMUST00000201932 1309 ntBASIC15.28■□□□□ 0.04
Trim28Q62318 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Gm37600-201ENSMUST00000193764 3292 ntBASIC15.28■□□□□ 0.04
Trim28Q62318 Gm38042-201ENSMUST00000191614 5208 ntBASIC15.28■□□□□ 0.04
Trim28Q62318 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Gm26013-201ENSMUST00000104404 119 ntBASIC15.28■□□□□ 0.04
Trim28Q62318 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Gm6548-201ENSMUST00000167498 1165 ntBASIC15.28■□□□□ 0.04
Trim28Q62318 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Gm21778-201ENSMUST00000178779 471 ntBASIC15.28■□□□□ 0.04
Trim28Q62318 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim28Q62318 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC15.28■□□□□ 0.04
Trim28Q62318 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC15.28■□□□□ 0.04
Trim28Q62318 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim28Q62318 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim28Q62318 CT025553.1-201ENSMUST00000226292 299 ntBASIC15.28■□□□□ 0.04
Trim28Q62318 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Trim28Q62318 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim28Q62318 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Trim28Q62318 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim28Q62318 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Trim28Q62318 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim28Q62318 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim28Q62318 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim28Q62318 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim28Q62318 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Gm4879-201ENSMUST00000122190 1272 ntBASIC15.27■□□□□ 0.04
Trim28Q62318 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC15.27■□□□□ 0.04
Trim28Q62318 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC15.27■□□□□ 0.04
Trim28Q62318 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC15.27■□□□□ 0.04
Trim28Q62318 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Mir6998-201ENSMUST00000183343 64 ntBASIC15.27■□□□□ 0.04
Trim28Q62318 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC15.27■□□□□ 0.04
Trim28Q62318 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 CT010506.1-201ENSMUST00000223673 349 ntBASIC15.27■□□□□ 0.04
Trim28Q62318 AC122346.3-201ENSMUST00000223983 306 ntBASIC15.27■□□□□ 0.04
Trim28Q62318 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim28Q62318 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms