Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm44315-201ENSMUST00000203041 219 ntBASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Gm23680-201ENSMUST00000083162 164 ntBASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 n-R5s211-201ENSMUST00000093689 119 ntBASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Upf3aQ3ULJ3 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Gm11340-201ENSMUST00000119226 412 ntBASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Gm9089-201ENSMUST00000122027 526 ntBASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Gm6407-201ENSMUST00000176468 549 ntBASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 AC102368.1-201ENSMUST00000227161 892 ntBASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 AC136376.2-201ENSMUST00000228819 490 ntBASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Gm45199-201ENSMUST00000207640 1507 ntBASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Gm45743-201ENSMUST00000212701 2795 ntBASIC12.47□□□□□ -0.41
Upf3aQ3ULJ3 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Map1b-203ENSMUST00000223725 2669 ntBASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Gm25766-201ENSMUST00000104101 131 ntBASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Gm11244-201ENSMUST00000121243 237 ntBASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Gm26047-201ENSMUST00000157308 113 ntBASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Gm15744-201ENSMUST00000161734 213 ntBASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Gm26047-202ENSMUST00000198840 115 ntBASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Upf3aQ3ULJ3 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
Upf3aQ3ULJ3 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Upf3aQ3ULJ3 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
Upf3aQ3ULJ3 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Upf3aQ3ULJ3 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Upf3aQ3ULJ3 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Upf3aQ3ULJ3 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Upf3aQ3ULJ3 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Upf3aQ3ULJ3 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
Upf3aQ3ULJ3 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms