Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb1P63158 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Hmgb1P63158 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Hmgb1P63158 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Hmgb1P63158 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC13.1□□□□□ -0.31
Hmgb1P63158 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Bcl2-202ENSMUST00000189999 2841 ntBASIC13.09□□□□□ -0.31
Hmgb1P63158 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Btk-202ENSMUST00000113213 2121 ntTSL 5 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Gm17420-201ENSMUST00000164753 153 ntBASIC13.09□□□□□ -0.31
Hmgb1P63158 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Gm27572-201ENSMUST00000183702 255 ntBASIC13.09□□□□□ -0.31
Hmgb1P63158 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC13.09□□□□□ -0.31
Hmgb1P63158 AC164099.2-201ENSMUST00000227795 2005 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Hmgb1P63158 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Hmgb1P63158 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC13.08□□□□□ -0.31
Hmgb1P63158 Gm42498-201ENSMUST00000199981 1372 ntBASIC13.08□□□□□ -0.31
Hmgb1P63158 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Hmgb1P63158 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC13.08□□□□□ -0.32
Hmgb1P63158 Rtn3-202ENSMUST00000065304 5030 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.32
Hmgb1P63158 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC13.08□□□□□ -0.32
Hmgb1P63158 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC13.08□□□□□ -0.32
Hmgb1P63158 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC13.08□□□□□ -0.32
Hmgb1P63158 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
Hmgb1P63158 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Hmgb1P63158 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC13.08□□□□□ -0.32
Hmgb1P63158 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC13.08□□□□□ -0.32
Hmgb1P63158 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 CT025533.2-201ENSMUST00000228715 1248 ntBASIC13.08□□□□□ -0.32
Hmgb1P63158 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Hmgb1P63158 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC13.08□□□□□ -0.32
Hmgb1P63158 Gm8146-201ENSMUST00000192106 1847 ntBASIC13.08□□□□□ -0.32
Hmgb1P63158 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Hmgb1P63158 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 AC124397.2-201ENSMUST00000225575 2215 ntBASIC13.08□□□□□ -0.32
Hmgb1P63158 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Hmgb1P63158 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Gal3st2-201ENSMUST00000094663 2844 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Hmgb1P63158 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb1P63158 Gm37348-201ENSMUST00000193104 1789 ntBASIC13.07□□□□□ -0.32
Hmgb1P63158 Gm43242-201ENSMUST00000199507 1776 ntBASIC13.07□□□□□ -0.32
Hmgb1P63158 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Hmgb1P63158 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb1P63158 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb1P63158 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb1P63158 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb1P63158 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb1P63158 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Hmgb1P63158 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Hmgb1P63158 Gm12241-201ENSMUST00000118330 726 ntBASIC13.07□□□□□ -0.32
Hmgb1P63158 Gm14726-201ENSMUST00000120623 896 ntBASIC13.07□□□□□ -0.32
Hmgb1P63158 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 96.1 ms