Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 Gm9133-201ENSMUST00000118289 540 ntBASIC17.94■□□□□ 0.46
Cux1P53564 Mir1905-201ENSMUST00000122779 82 ntBASIC17.94■□□□□ 0.46
Cux1P53564 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC17.94■□□□□ 0.46
Cux1P53564 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 Gm20554-201ENSMUST00000177421 2352 ntBASIC17.94■□□□□ 0.46
Cux1P53564 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 Zfp872-201ENSMUST00000091508 1395 ntTSL 5 BASIC17.94■□□□□ 0.46
Cux1P53564 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 Gm5171-201ENSMUST00000214944 1415 ntBASIC17.94■□□□□ 0.46
Cux1P53564 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
Cux1P53564 Gm3755-201ENSMUST00000169555 1462 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Cux1P53564 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
Cux1P53564 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cux1P53564 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC17.93■□□□□ 0.46
Cux1P53564 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC17.93■□□□□ 0.46
Cux1P53564 Mir7035-201ENSMUST00000184713 82 ntBASIC17.93■□□□□ 0.46
Cux1P53564 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC17.93■□□□□ 0.46
Cux1P53564 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Gm6653-201ENSMUST00000218063 1288 ntBASIC17.93■□□□□ 0.46
Cux1P53564 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC17.93■□□□□ 0.46
Cux1P53564 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Cux1P53564 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Gm43760-201ENSMUST00000202120 3015 ntBASIC17.93■□□□□ 0.46
Cux1P53564 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC17.93■□□□□ 0.46
Cux1P53564 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC17.93■□□□□ 0.46
Cux1P53564 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
Cux1P53564 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Il1rn-202ENSMUST00000114485 728 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Gm12948-201ENSMUST00000119406 682 ntBASIC17.93■□□□□ 0.46
Cux1P53564 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC17.93■□□□□ 0.46
Cux1P53564 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 4930507D10Rik-201ENSMUST00000137411 1152 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cux1P53564 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC17.93■□□□□ 0.46
Cux1P53564 Gm37852-201ENSMUST00000193027 350 ntBASIC17.93■□□□□ 0.46
Cux1P53564 C630004L07Rik-201ENSMUST00000193236 1275 ntBASIC17.93■□□□□ 0.46
Cux1P53564 Zmiz1os1-202ENSMUST00000225188 1223 ntBASIC17.93■□□□□ 0.46
Cux1P53564 AC115304.2-201ENSMUST00000226399 332 ntBASIC17.93■□□□□ 0.46
Cux1P53564 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cux1P53564 Gm12159-201ENSMUST00000143869 1447 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cux1P53564 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cux1P53564 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cux1P53564 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC17.92■□□□□ 0.46
Cux1P53564 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cux1P53564 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC17.92■□□□□ 0.46
Cux1P53564 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
Cux1P53564 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Cux1P53564 Gm23612-201ENSMUST00000103823 110 ntBASIC17.92■□□□□ 0.46
Cux1P53564 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC17.92■□□□□ 0.46
Cux1P53564 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC17.92■□□□□ 0.46
Cux1P53564 Gm13026-201ENSMUST00000140113 608 ntTSL 5 BASIC17.92■□□□□ 0.46
Cux1P53564 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC17.92■□□□□ 0.46
Cux1P53564 Gm23576-201ENSMUST00000179918 110 ntBASIC17.92■□□□□ 0.46
Cux1P53564 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cux1P53564 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC17.92■□□□□ 0.46
Cux1P53564 Gm45085-201ENSMUST00000209100 441 ntBASIC17.92■□□□□ 0.46
Cux1P53564 Gm18035-201ENSMUST00000211962 589 ntBASIC17.92■□□□□ 0.46
Cux1P53564 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cux1P53564 Gm2594-201ENSMUST00000214774 742 ntBASIC17.92■□□□□ 0.46
Cux1P53564 Acy1-211ENSMUST00000216400 1030 ntTSL 5 BASIC17.92■□□□□ 0.46
Cux1P53564 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC17.92■□□□□ 0.46
Cux1P53564 AC122035.1-201ENSMUST00000227576 1016 ntBASIC17.92■□□□□ 0.46
Cux1P53564 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cux1P53564 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cux1P53564 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cux1P53564 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cux1P53564 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cux1P53564 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cux1P53564 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cux1P53564 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC17.91■□□□□ 0.46
Cux1P53564 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cux1P53564 Gm29100-201ENSMUST00000187564 4410 ntBASIC17.91■□□□□ 0.46
Cux1P53564 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cux1P53564 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cux1P53564 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cux1P53564 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cux1P53564 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC17.91■□□□□ 0.46
Cux1P53564 Gm5555-201ENSMUST00000120352 1111 ntBASIC17.91■□□□□ 0.46
Cux1P53564 Gm13572-201ENSMUST00000153675 559 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cux1P53564 Gm28901-201ENSMUST00000188810 474 ntTSL 5 BASIC17.91■□□□□ 0.46
Cux1P53564 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cux1P53564 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms