Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Abi1-203ENSMUST00000093171 2411 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
Rfx1P48377 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Smtn-203ENSMUST00000075118 3117 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Gm8908-201ENSMUST00000121633 1024 ntBASIC14.14□□□□□ -0.15
Rfx1P48377 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC14.14□□□□□ -0.15
Rfx1P48377 Gm24548-201ENSMUST00000158650 108 ntBASIC14.14□□□□□ -0.15
Rfx1P48377 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC14.14□□□□□ -0.15
Rfx1P48377 Gm38230-201ENSMUST00000193572 1159 ntBASIC14.14□□□□□ -0.15
Rfx1P48377 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Rfx1P48377 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Rfx1P48377 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC14.14□□□□□ -0.15
Rfx1P48377 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
Rfx1P48377 Gm2673-201ENSMUST00000120958 1608 ntBASIC14.14□□□□□ -0.15
Rfx1P48377 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC14.14□□□□□ -0.15
Rfx1P48377 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Rfx1P48377 Tyw1-201ENSMUST00000040213 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Rfx1P48377 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Rfx1P48377 Gm10652-201ENSMUST00000199790 2622 ntBASIC14.13□□□□□ -0.15
Rfx1P48377 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC14.13□□□□□ -0.15
Rfx1P48377 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Rfx1P48377 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Prok1-202ENSMUST00000197758 3063 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC14.13□□□□□ -0.15
Rfx1P48377 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
Rfx1P48377 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC14.13□□□□□ -0.15
Rfx1P48377 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC14.13□□□□□ -0.15
Rfx1P48377 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC14.13□□□□□ -0.15
Rfx1P48377 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC14.13□□□□□ -0.15
Rfx1P48377 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 AC126257.1-201ENSMUST00000213195 1536 ntBASIC14.13□□□□□ -0.15
Rfx1P48377 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Rfx1P48377 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Prss57-203ENSMUST00000169684 2841 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Gm21136-201ENSMUST00000186812 2575 ntBASIC14.13□□□□□ -0.15
Rfx1P48377 Gm6605-201ENSMUST00000031488 2574 ntBASIC14.13□□□□□ -0.15
Rfx1P48377 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Rfx1P48377 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Rfx1P48377 Gm8131-201ENSMUST00000213783 1570 ntBASIC14.13□□□□□ -0.15
Rfx1P48377 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Rfx1P48377 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Rfx1P48377 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Rfx1P48377 Gm43931-201ENSMUST00000204817 2870 ntBASIC14.12□□□□□ -0.15
Rfx1P48377 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Rfx1P48377 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC14.12□□□□□ -0.15
Rfx1P48377 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC14.12□□□□□ -0.15
Rfx1P48377 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC14.12□□□□□ -0.15
Rfx1P48377 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
Rfx1P48377 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Gm4986-201ENSMUST00000119731 549 ntBASIC14.12□□□□□ -0.15
Rfx1P48377 Gm14441-201ENSMUST00000121960 540 ntBASIC14.12□□□□□ -0.15
Rfx1P48377 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Rfx1P48377 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC14.12□□□□□ -0.15
Rfx1P48377 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Rfx1P48377 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Rfx1P48377 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Rfx1P48377 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC14.12□□□□□ -0.15
Rfx1P48377 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC14.12□□□□□ -0.15
Rfx1P48377 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC14.12□□□□□ -0.15
Rfx1P48377 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC14.12□□□□□ -0.15
Rfx1P48377 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 98.3 ms