Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC11.26□□□□□ -0.61
Cdx2P43241 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC11.26□□□□□ -0.61
Cdx2P43241 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC11.26□□□□□ -0.61
Cdx2P43241 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
Cdx2P43241 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC11.26□□□□□ -0.61
Cdx2P43241 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC11.26□□□□□ -0.61
Cdx2P43241 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Cdx2P43241 Gm37826-201ENSMUST00000195329 322 ntBASIC11.26□□□□□ -0.61
Cdx2P43241 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC11.26□□□□□ -0.61
Cdx2P43241 Gm45758-201ENSMUST00000212448 1006 ntBASIC11.26□□□□□ -0.61
Cdx2P43241 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Cdx2P43241 CT009546.1-201ENSMUST00000222573 1120 ntBASIC11.26□□□□□ -0.61
Cdx2P43241 AC129308.3-201ENSMUST00000225652 524 ntBASIC11.26□□□□□ -0.61
Cdx2P43241 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Cdx2P43241 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Cdx2P43241 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC11.26□□□□□ -0.61
Cdx2P43241 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Cdx2P43241 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Cdx2P43241 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC11.26□□□□□ -0.61
Cdx2P43241 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Cdx2P43241 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Cdx2P43241 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Cdx2P43241 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Cdx2P43241 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Map1b-203ENSMUST00000223725 2669 ntBASIC11.25□□□□□ -0.61
Cdx2P43241 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC11.25□□□□□ -0.61
Cdx2P43241 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Cdx2P43241 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Gm21358-201ENSMUST00000191645 1659 ntBASIC11.25□□□□□ -0.61
Cdx2P43241 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC11.25□□□□□ -0.61
Cdx2P43241 Gm13117-201ENSMUST00000120894 691 ntBASIC11.25□□□□□ -0.61
Cdx2P43241 Gm13022-201ENSMUST00000121181 285 ntBASIC11.25□□□□□ -0.61
Cdx2P43241 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC11.25□□□□□ -0.61
Cdx2P43241 Gm10807-201ENSMUST00000177134 795 ntBASIC11.25□□□□□ -0.61
Cdx2P43241 Gm9135-201ENSMUST00000182963 990 ntBASIC11.25□□□□□ -0.61
Cdx2P43241 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC11.25□□□□□ -0.61
Cdx2P43241 AC159376.1-201ENSMUST00000218504 630 ntBASIC11.25□□□□□ -0.61
Cdx2P43241 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
Cdx2P43241 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC11.25□□□□□ -0.61
Cdx2P43241 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
Cdx2P43241 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Cdx2P43241 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cdx2P43241 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Gm37105-201ENSMUST00000192251 2085 ntBASIC11.24□□□□□ -0.61
Cdx2P43241 AC159195.1-201ENSMUST00000225867 2086 ntBASIC11.24□□□□□ -0.61
Cdx2P43241 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC11.24□□□□□ -0.61
Cdx2P43241 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Gm43061-201ENSMUST00000198850 2241 ntBASIC11.24□□□□□ -0.61
Cdx2P43241 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC11.24□□□□□ -0.61
Cdx2P43241 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Cdx2P43241 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cdx2P43241 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms