Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Gm5620-201ENSMUST00000077991 1348 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Cdx1P18111 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC9.62□□□□□ -0.87
Cdx1P18111 Rpgrip1-202ENSMUST00000111603 5380 ntAPPRIS P2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC9.62□□□□□ -0.87
Cdx1P18111 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Zfp109-202ENSMUST00000206362 2932 ntAPPRIS P2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC9.62□□□□□ -0.87
Cdx1P18111 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC9.62□□□□□ -0.87
Cdx1P18111 Gm11618-201ENSMUST00000117946 267 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm5638-201ENSMUST00000118618 1258 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm14723-201ENSMUST00000118686 215 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm12537-201ENSMUST00000119266 1002 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm12070-201ENSMUST00000119551 1002 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm12671-201ENSMUST00000119978 1002 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm13292-201ENSMUST00000120014 1000 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm12403-201ENSMUST00000121384 959 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC9.62□□□□□ -0.87
Cdx1P18111 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC9.62□□□□□ -0.87
Cdx1P18111 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC9.62□□□□□ -0.87
Cdx1P18111 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Gm10359-201ENSMUST00000180167 1002 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm12033-201ENSMUST00000180654 1002 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm5559-201ENSMUST00000180755 1002 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm4335-201ENSMUST00000182581 1004 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm29608-201ENSMUST00000190444 463 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Igkv2-116-201ENSMUST00000199327 362 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Gm43822-201ENSMUST00000200285 476 ntBASIC9.62□□□□□ -0.87
Cdx1P18111 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
Cdx1P18111 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Lamb1-205ENSMUST00000169088 5557 ntAPPRIS P1 TSL 5 BASIC9.62□□□□□ -0.87
Cdx1P18111 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Fbrs-201ENSMUST00000048896 2650 ntAPPRIS P2 TSL 5 BASIC9.62□□□□□ -0.87
Cdx1P18111 Tnpo3-201ENSMUST00000012679 4251 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
Cdx1P18111 Ipo4-201ENSMUST00000047131 3846 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Zfp932-203ENSMUST00000112540 2081 ntAPPRIS P2 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Pomt1-201ENSMUST00000036473 2918 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Mcf2l-217ENSMUST00000145067 5313 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
Cdx1P18111 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC9.62□□□□□ -0.87
Cdx1P18111 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC9.61□□□□□ -0.87
Cdx1P18111 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
Cdx1P18111 Arhgap36-202ENSMUST00000114904 3033 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Zbtb21-202ENSMUST00000063605 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Pex19-202ENSMUST00000111252 2844 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm38192-201ENSMUST00000194364 1847 ntBASIC9.61□□□□□ -0.87
Cdx1P18111 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC9.61□□□□□ -0.87
Cdx1P18111 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
Cdx1P18111 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm13694-201ENSMUST00000178533 2493 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm13693-201ENSMUST00000178960 2493 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm13698-202ENSMUST00000179192 2493 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm13696-202ENSMUST00000180347 2493 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
Cdx1P18111 Pex13-201ENSMUST00000020523 4146 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm13691-201ENSMUST00000099947 2493 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm13697-201ENSMUST00000099948 2493 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm13695-201ENSMUST00000099951 2493 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
Cdx1P18111 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Pnpla6-201ENSMUST00000004681 4438 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC9.61□□□□□ -0.87
Cdx1P18111 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Glyctk-202ENSMUST00000112543 4081 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Supt16-201ENSMUST00000046709 4673 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
Cdx1P18111 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC9.61□□□□□ -0.87
Cdx1P18111 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC9.61□□□□□ -0.87
Cdx1P18111 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC9.61□□□□□ -0.87
Cdx1P18111 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC9.61□□□□□ -0.87
Cdx1P18111 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC9.61□□□□□ -0.87
Cdx1P18111 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC9.61□□□□□ -0.87
Cdx1P18111 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC9.61□□□□□ -0.87
Cdx1P18111 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC9.61□□□□□ -0.87
Cdx1P18111 CT009713.10-202ENSMUST00000225734 696 ntBASIC9.61□□□□□ -0.87
Cdx1P18111 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Cdx1P18111 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms