Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm6114-201ENSMUST00000182472 968 ntBASIC12.81□□□□□ -0.36
RaraP11416 Gm6621-201ENSMUST00000193251 772 ntBASIC12.81□□□□□ -0.36
RaraP11416 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Gm43438-201ENSMUST00000198133 379 ntBASIC12.81□□□□□ -0.36
RaraP11416 Gm43002-201ENSMUST00000200310 155 ntBASIC12.81□□□□□ -0.36
RaraP11416 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC12.81□□□□□ -0.36
RaraP11416 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC12.81□□□□□ -0.36
RaraP11416 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
RaraP11416 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
RaraP11416 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
RaraP11416 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC12.81□□□□□ -0.36
RaraP11416 Gm10152-201ENSMUST00000193475 1344 ntBASIC12.81□□□□□ -0.36
RaraP11416 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
RaraP11416 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC12.81□□□□□ -0.36
RaraP11416 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
RaraP11416 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC12.81□□□□□ -0.36
RaraP11416 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
RaraP11416 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC12.8□□□□□ -0.36
RaraP11416 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
RaraP11416 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC12.8□□□□□ -0.36
RaraP11416 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
RaraP11416 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC12.8□□□□□ -0.36
RaraP11416 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
RaraP11416 Gm11960-201ENSMUST00000122068 925 ntBASIC12.8□□□□□ -0.36
RaraP11416 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC12.8□□□□□ -0.36
RaraP11416 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
RaraP11416 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
RaraP11416 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
RaraP11416 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
RaraP11416 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
RaraP11416 Gm3096-201ENSMUST00000185770 364 ntBASIC12.8□□□□□ -0.36
RaraP11416 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
RaraP11416 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
RaraP11416 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
RaraP11416 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC12.8□□□□□ -0.36
RaraP11416 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Gm9200-201ENSMUST00000118513 1354 ntBASIC12.8□□□□□ -0.36
RaraP11416 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
RaraP11416 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RaraP11416 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC12.79□□□□□ -0.36
RaraP11416 Pla2g15-201ENSMUST00000034377 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
RaraP11416 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC12.79□□□□□ -0.36
RaraP11416 Gm13392-201ENSMUST00000117708 150 ntBASIC12.79□□□□□ -0.36
RaraP11416 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC12.79□□□□□ -0.36
RaraP11416 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC12.79□□□□□ -0.36
RaraP11416 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC12.79□□□□□ -0.36
RaraP11416 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC12.79□□□□□ -0.36
RaraP11416 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC12.79□□□□□ -0.36
RaraP11416 AC153954.1-201ENSMUST00000216959 255 ntBASIC12.79□□□□□ -0.36
RaraP11416 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC12.79□□□□□ -0.36
RaraP11416 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Gm8420-201ENSMUST00000097103 598 ntBASIC12.79□□□□□ -0.36
RaraP11416 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC12.79□□□□□ -0.36
RaraP11416 Wt1os-203ENSMUST00000172701 2960 ntTSL 2 BASIC12.79□□□□□ -0.36
RaraP11416 Gm45677-201ENSMUST00000209975 1341 ntBASIC12.79□□□□□ -0.36
RaraP11416 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
RaraP11416 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RaraP11416 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms