Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Htr2c-202ENSMUST00000096299 4883 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Mid1-214ENSMUST00000163810 3689 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Lire1P11260 Gm26836-201ENSMUST00000181056 1568 ntTSL 5 BASIC11.37□□□□□ -0.59
Lire1P11260 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC11.37□□□□□ -0.59
Lire1P11260 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Btk-202ENSMUST00000113213 2121 ntTSL 5 BASIC11.36□□□□□ -0.59
Lire1P11260 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC11.36□□□□□ -0.59
Lire1P11260 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Lire1P11260 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
Lire1P11260 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
Lire1P11260 Nos1-206ENSMUST00000142742 10123 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
Lire1P11260 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Mthfr-201ENSMUST00000069604 6072 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Nek4-207ENSMUST00000228328 4245 ntAPPRIS P2 BASIC11.36□□□□□ -0.59
Lire1P11260 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Pck2-201ENSMUST00000048781 3400 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 BC035947-201ENSMUST00000170511 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC11.36□□□□□ -0.59
Lire1P11260 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC11.36□□□□□ -0.59
Lire1P11260 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC11.36□□□□□ -0.59
Lire1P11260 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC11.36□□□□□ -0.59
Lire1P11260 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Myocd-203ENSMUST00000108695 5114 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Gm43143-201ENSMUST00000196083 2023 ntBASIC11.36□□□□□ -0.59
Lire1P11260 Col6a3-202ENSMUST00000097653 9001 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Lire1P11260 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC11.36□□□□□ -0.59
Lire1P11260 Tbc1d17-201ENSMUST00000047085 8750 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 8030423F21Rik-201ENSMUST00000064097 2851 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Lire1P11260 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Fasn-205ENSMUST00000206589 8333 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Lire1P11260 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Thsd4-206ENSMUST00000171654 8522 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Lire1P11260 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Olfr463-203ENSMUST00000217095 1977 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Lire1P11260 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Lire1P11260 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Gm10603-201ENSMUST00000183512 2279 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Pnmal2-201ENSMUST00000094807 4147 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Lire1P11260 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Lire1P11260 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Gm43112-201ENSMUST00000196665 3122 ntBASIC11.35□□□□□ -0.59
Lire1P11260 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC11.35□□□□□ -0.59
Lire1P11260 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC11.35□□□□□ -0.59
Lire1P11260 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC11.35□□□□□ -0.59
Lire1P11260 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC11.35□□□□□ -0.59
Lire1P11260 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
Lire1P11260 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC11.35□□□□□ -0.59
Lire1P11260 Gm31256-201ENSMUST00000194705 506 ntBASIC11.35□□□□□ -0.59
Lire1P11260 Rps4l-202ENSMUST00000204242 789 ntBASIC11.35□□□□□ -0.59
Lire1P11260 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC11.35□□□□□ -0.59
Lire1P11260 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 AC101945.2-201ENSMUST00000227886 1377 ntBASIC11.35□□□□□ -0.59
Lire1P11260 Gm10782-202ENSMUST00000223775 1480 ntBASIC11.35□□□□□ -0.59
Lire1P11260 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC11.35□□□□□ -0.59
Lire1P11260 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC11.35□□□□□ -0.59
Lire1P11260 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC11.35□□□□□ -0.59
Lire1P11260 Gm6605-201ENSMUST00000031488 2574 ntBASIC11.35□□□□□ -0.59
Lire1P11260 Gm5403-201ENSMUST00000117105 2795 ntBASIC11.35□□□□□ -0.59
Lire1P11260 Riok3-201ENSMUST00000025270 3661 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Lire1P11260 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms