Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Gm13910-201ENSMUST00000121752 1428 ntBASIC12.21□□□□□ -0.45
Sdc4O35988 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Sdc4O35988 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC12.21□□□□□ -0.45
Sdc4O35988 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
Sdc4O35988 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC12.21□□□□□ -0.45
Sdc4O35988 AC157950.1-201ENSMUST00000217561 2168 ntBASIC12.21□□□□□ -0.45
Sdc4O35988 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Sdc4O35988 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Sdc4O35988 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC12.21□□□□□ -0.45
Sdc4O35988 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC12.21□□□□□ -0.45
Sdc4O35988 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC12.21□□□□□ -0.45
Sdc4O35988 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC12.21□□□□□ -0.45
Sdc4O35988 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sdc4O35988 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
Sdc4O35988 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc4O35988 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc4O35988 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc4O35988 Mypopos-202ENSMUST00000205975 2321 ntBASIC12.21□□□□□ -0.46
Sdc4O35988 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc4O35988 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sdc4O35988 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Lepr-203ENSMUST00000106921 5542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC12.2□□□□□ -0.46
Sdc4O35988 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Sdc4O35988 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 AC130671.2-201ENSMUST00000227224 1621 ntBASIC12.2□□□□□ -0.46
Sdc4O35988 Gm15595-201ENSMUST00000120840 961 ntBASIC12.2□□□□□ -0.46
Sdc4O35988 Mup-ps26-201ENSMUST00000121751 202 ntBASIC12.2□□□□□ -0.46
Sdc4O35988 Gm7666-201ENSMUST00000146631 819 ntBASIC12.2□□□□□ -0.46
Sdc4O35988 Gm15881-201ENSMUST00000148792 942 ntBASIC12.2□□□□□ -0.46
Sdc4O35988 Gm26047-201ENSMUST00000157308 113 ntBASIC12.2□□□□□ -0.46
Sdc4O35988 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC12.2□□□□□ -0.46
Sdc4O35988 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC12.2□□□□□ -0.46
Sdc4O35988 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
Sdc4O35988 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC12.2□□□□□ -0.46
Sdc4O35988 Gm5852-201ENSMUST00000194119 1021 ntBASIC12.2□□□□□ -0.46
Sdc4O35988 Gm26047-202ENSMUST00000198840 115 ntBASIC12.2□□□□□ -0.46
Sdc4O35988 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Gm6450-201ENSMUST00000200896 574 ntBASIC12.2□□□□□ -0.46
Sdc4O35988 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Sdc4O35988 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Sdc4O35988 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Sdc4O35988 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Sdc4O35988 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.2□□□□□ -0.46
Sdc4O35988 Nupl1-206ENSMUST00000225111 2936 ntBASIC12.2□□□□□ -0.46
Sdc4O35988 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sdc4O35988 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Sdc4O35988 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc4O35988 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Sdc4O35988 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc4O35988 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc4O35988 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc4O35988 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc4O35988 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sdc4O35988 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC12.19□□□□□ -0.46
Sdc4O35988 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Sdc4O35988 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Sdc4O35988 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Sdc4O35988 Gm14314-201ENSMUST00000118225 1015 ntBASIC12.19□□□□□ -0.46
Sdc4O35988 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 59.4 ms