Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC11.63□□□□□ -0.55
Chd3B1AR17 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Gm2517-201ENSMUST00000215651 348 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Snora73b-201ENSMUST00000083419 205 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Chd3B1AR17 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC11.62□□□□□ -0.55
Chd3B1AR17 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Chd3B1AR17 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Gm38194-201ENSMUST00000194529 2211 ntBASIC11.62□□□□□ -0.55
Chd3B1AR17 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Gm8194-201ENSMUST00000159783 859 ntBASIC11.62□□□□□ -0.55
Chd3B1AR17 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Chd3B1AR17 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
Chd3B1AR17 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC11.62□□□□□ -0.55
Chd3B1AR17 Gm27438-201ENSMUST00000183480 110 ntBASIC11.62□□□□□ -0.55
Chd3B1AR17 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC11.62□□□□□ -0.55
Chd3B1AR17 Gm8365-201ENSMUST00000197334 648 ntBASIC11.62□□□□□ -0.55
Chd3B1AR17 Gm43186-201ENSMUST00000198130 824 ntBASIC11.62□□□□□ -0.55
Chd3B1AR17 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC11.62□□□□□ -0.55
Chd3B1AR17 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC11.62□□□□□ -0.55
Chd3B1AR17 Piezo2-202ENSMUST00000047480 10724 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC11.62□□□□□ -0.55
Chd3B1AR17 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Chd3B1AR17 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Chd3B1AR17 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd3B1AR17 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Gm13328-201ENSMUST00000120816 1020 ntBASIC11.61□□□□□ -0.55
Chd3B1AR17 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Chd3B1AR17 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC11.61□□□□□ -0.55
Chd3B1AR17 Gm45398-201ENSMUST00000210561 165 ntBASIC11.61□□□□□ -0.55
Chd3B1AR17 AC166992.1-201ENSMUST00000216356 565 ntBASIC11.61□□□□□ -0.55
Chd3B1AR17 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC11.61□□□□□ -0.55
Chd3B1AR17 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Chd3B1AR17 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Gm36970-201ENSMUST00000193688 1859 ntBASIC11.61□□□□□ -0.55
Chd3B1AR17 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Chd3B1AR17 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Chd3B1AR17 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd3B1AR17 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC11.61□□□□□ -0.55
Chd3B1AR17 Ighv1-48-201ENSMUST00000191795 294 ntBASIC11.61□□□□□ -0.55
Chd3B1AR17 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC11.61□□□□□ -0.55
Chd3B1AR17 Lect2-202ENSMUST00000225183 823 ntBASIC11.61□□□□□ -0.55
Chd3B1AR17 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms