Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Gm19692-201ENSMUST00000203856 2084 ntBASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Gm9176-201ENSMUST00000219955 1120 ntBASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Trim3Q9R1R2 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 AC123857.2-201ENSMUST00000225756 1582 ntBASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 AC124433.1-202ENSMUST00000224762 1535 ntBASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Gm13142-201ENSMUST00000117213 1453 ntBASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Iqsec1-201ENSMUST00000101151 6490 ntTSL 5 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC11.21□□□□□ -0.61
Trim3Q9R1R2 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC11.21□□□□□ -0.61
Trim3Q9R1R2 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim3Q9R1R2 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim3Q9R1R2 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC11.21□□□□□ -0.62
Trim3Q9R1R2 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim3Q9R1R2 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim3Q9R1R2 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim3Q9R1R2 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC11.21□□□□□ -0.62
Trim3Q9R1R2 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC11.21□□□□□ -0.62
Trim3Q9R1R2 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Trim3Q9R1R2 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Trim3Q9R1R2 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms