Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Gm45495-201ENSMUST00000200940 1700 ntBASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Gm22334-201ENSMUST00000158070 133 ntBASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Rprl1-202ENSMUST00000198476 238 ntBASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Gzmn-202ENSMUST00000225535 989 ntBASIC13.34□□□□□ -0.27
Smc1aQ9CU62 CT025694.1-201ENSMUST00000226188 934 ntBASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Mir339-201ENSMUST00000083659 96 ntBASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Smc1aQ9CU62 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Smc1aQ9CU62 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC13.33□□□□□ -0.27
Smc1aQ9CU62 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Smc1aQ9CU62 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Smc1aQ9CU62 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.27
Smc1aQ9CU62 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.27
Smc1aQ9CU62 AC124577.2-201ENSMUST00000217413 2420 ntBASIC13.33□□□□□ -0.27
Smc1aQ9CU62 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.27
Smc1aQ9CU62 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Smc1aQ9CU62 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Smc1aQ9CU62 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Gm45691-201ENSMUST00000206905 1120 ntBASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Gm8913-201ENSMUST00000209491 641 ntBASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 G6pdx-201ENSMUST00000004327 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Smc1aQ9CU62 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Smc1aQ9CU62 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Smc1aQ9CU62 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Smc1aQ9CU62 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Smc1aQ9CU62 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Smc1aQ9CU62 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Smc1aQ9CU62 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Smc1aQ9CU62 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Smc1aQ9CU62 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Smc1aQ9CU62 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
Smc1aQ9CU62 Gm23200-201ENSMUST00000104379 132 ntBASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms