Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm12165-201ENSMUST00000117047 342 ntBASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Gm13461-201ENSMUST00000120980 662 ntBASIC13.21□□□□□ -0.29
Trim47Q8C0E3 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trim47Q8C0E3 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Gm23085-201ENSMUST00000157849 293 ntBASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Gm9192-201ENSMUST00000183221 985 ntBASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Gm19353-201ENSMUST00000184561 445 ntBASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Gm43275-201ENSMUST00000202053 1020 ntBASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Gm45575-201ENSMUST00000210283 548 ntBASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trim47Q8C0E3 CT009713.8-201ENSMUST00000225448 560 ntBASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Trim47Q8C0E3 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Trim47Q8C0E3 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trim47Q8C0E3 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trim47Q8C0E3 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trim47Q8C0E3 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Trim47Q8C0E3 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC13.21□□□□□ -0.3
Trim47Q8C0E3 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.3
Trim47Q8C0E3 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
Trim47Q8C0E3 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Gm24891-201ENSMUST00000104391 136 ntBASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Gm9062-201ENSMUST00000117712 727 ntBASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Gm13045-201ENSMUST00000119019 712 ntBASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Gm14441-201ENSMUST00000121960 540 ntBASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Gm22902-201ENSMUST00000158488 302 ntBASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Gm1821-202ENSMUST00000227415 750 ntBASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Gm7104-201ENSMUST00000179741 2532 ntBASIC13.2□□□□□ -0.3
Trim47Q8C0E3 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim47Q8C0E3 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 AC093022.4-203ENSMUST00000228523 2657 ntBASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Gm11941-201ENSMUST00000119904 610 ntBASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Gm34767-201ENSMUST00000191813 1062 ntBASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Gm45574-201ENSMUST00000210921 331 ntBASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Gm9785-201ENSMUST00000062642 1006 ntBASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trim47Q8C0E3 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 72.6 ms