Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Gm26013-201ENSMUST00000104404 119 ntBASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Gm25072-201ENSMUST00000175233 235 ntBASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 AC118639.2-201ENSMUST00000226289 223 ntBASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Usp40Q8BWR4 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 AC108858.2-201ENSMUST00000228186 1425 ntBASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Gm21358-201ENSMUST00000191645 1659 ntBASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Gm8492-201ENSMUST00000182375 987 ntBASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Gm17877-201ENSMUST00000192578 814 ntBASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 CT009546.1-201ENSMUST00000222573 1120 ntBASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Prrxl1-205ENSMUST00000228878 723 ntBASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Gm4978-201ENSMUST00000071565 801 ntBASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Gm45428-201ENSMUST00000209619 1789 ntBASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Usp40Q8BWR4 AC138329.2-201ENSMUST00000225579 1842 ntBASIC16.22■□□□□ 0.19
Usp40Q8BWR4 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm15615-201ENSMUST00000118876 198 ntBASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm11960-201ENSMUST00000122068 925 ntBASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm26047-201ENSMUST00000157308 113 ntBASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Mir6958-201ENSMUST00000184207 73 ntBASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm8531-201ENSMUST00000188319 893 ntBASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm43058-201ENSMUST00000197645 625 ntBASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm26047-202ENSMUST00000198840 115 ntBASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm23105-201ENSMUST00000083719 134 ntBASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Usp40Q8BWR4 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Usp40Q8BWR4 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Usp40Q8BWR4 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.18
Usp40Q8BWR4 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC16.21■□□□□ 0.18
Usp40Q8BWR4 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Usp40Q8BWR4 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 61.9 ms