Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Lire1P11260 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Lire1P11260 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 AC123834.1-201ENSMUST00000225346 2043 ntBASIC11.38□□□□□ -0.59
Lire1P11260 Armcx6-201ENSMUST00000052431 2024 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC11.38□□□□□ -0.59
Lire1P11260 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC11.38□□□□□ -0.59
Lire1P11260 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC11.38□□□□□ -0.59
Lire1P11260 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Arhgap36-202ENSMUST00000114904 3033 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC11.38□□□□□ -0.59
Lire1P11260 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Gm14017-201ENSMUST00000121934 386 ntBASIC11.38□□□□□ -0.59
Lire1P11260 Gm12363-201ENSMUST00000122250 668 ntBASIC11.38□□□□□ -0.59
Lire1P11260 Gm11978-201ENSMUST00000122315 466 ntBASIC11.38□□□□□ -0.59
Lire1P11260 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC11.38□□□□□ -0.59
Lire1P11260 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC11.38□□□□□ -0.59
Lire1P11260 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Lire1P11260 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Lire1P11260 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Lire1P11260 Gm26956-201ENSMUST00000182176 986 ntBASIC11.38□□□□□ -0.59
Lire1P11260 Gm38297-201ENSMUST00000195122 1057 ntBASIC11.38□□□□□ -0.59
Lire1P11260 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC11.38□□□□□ -0.59
Lire1P11260 Gm43999-201ENSMUST00000204286 2889 ntBASIC11.38□□□□□ -0.59
Lire1P11260 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Grem1-201ENSMUST00000099575 4148 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Dclk1-204ENSMUST00000196745 7962 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Lire1P11260 Robo1-201ENSMUST00000023600 7563 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Lire1P11260 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Gm44758-201ENSMUST00000206096 2068 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Lire1P11260 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Lire1P11260 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 4632415L05Rik-202ENSMUST00000198527 4087 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Gm24830-201ENSMUST00000102024 166 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC11.37□□□□□ -0.59
Lire1P11260 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC11.37□□□□□ -0.59
Lire1P11260 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC11.37□□□□□ -0.59
Lire1P11260 Gm25890-201ENSMUST00000177643 165 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Rnu1b2-201ENSMUST00000178073 165 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Rnu1b1-201ENSMUST00000178250 165 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Gm22614-201ENSMUST00000178300 165 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC11.37□□□□□ -0.59
Lire1P11260 Gm43138-201ENSMUST00000199123 708 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Gm13097-201ENSMUST00000210722 397 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC11.37□□□□□ -0.59
Lire1P11260 Gm18212-201ENSMUST00000211678 889 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC11.37□□□□□ -0.59
Lire1P11260 CT030182.1-201ENSMUST00000225935 533 ntBASIC11.37□□□□□ -0.59
Lire1P11260 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Gm22042-201ENSMUST00000082989 165 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Gm26232-201ENSMUST00000083360 166 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Gm24136-201ENSMUST00000083374 165 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Rnu1b6-201ENSMUST00000083839 166 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Gm26110-201ENSMUST00000083971 165 ntBASIC11.37□□□□□ -0.59
Lire1P11260 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Olfr71-203ENSMUST00000217544 2707 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Lire1P11260 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Lire1P11260 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC11.37□□□□□ -0.59
Lire1P11260 A930006I01Rik-201ENSMUST00000139065 2229 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms