Protein–RNA interactions for Protein: J3QNX5

Shisa8, Cysteine-knot AMPAR-modulating protein 39, mousemouse

Predictions only

Length 399 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shisa8J3QNX5 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 Gm7553-201ENSMUST00000185805 1426 ntBASIC10.82□□□□□ -0.68
Shisa8J3QNX5 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Shisa8J3QNX5 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Gm36940-201ENSMUST00000194281 2036 ntBASIC10.81□□□□□ -0.68
Shisa8J3QNX5 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Mup-ps23-201ENSMUST00000118063 630 ntBASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Gm13875-201ENSMUST00000120162 282 ntBASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Gm6560-201ENSMUST00000198588 1591 ntBASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Trpc6-203ENSMUST00000217462 3168 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Man2b2-201ENSMUST00000031002 3330 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Shisa8J3QNX5 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Gm4984-201ENSMUST00000115987 360 ntBASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Gm14247-201ENSMUST00000120950 237 ntBASIC10.8□□□□□ -0.68
Shisa8J3QNX5 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Gm13570-201ENSMUST00000140763 309 ntBASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Rprl1-201ENSMUST00000158050 327 ntBASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Gm29649-201ENSMUST00000185649 419 ntBASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC10.8□□□□□ -0.68
Shisa8J3QNX5 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 AC154671.1-201ENSMUST00000228617 1578 ntBASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Gm43579-201ENSMUST00000202387 1307 ntBASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Gm5620-201ENSMUST00000077991 1348 ntBASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Gm13135-201ENSMUST00000117628 3121 ntBASIC10.8□□□□□ -0.68
Shisa8J3QNX5 1700019D03Rik-202ENSMUST00000114492 3565 ntAPPRIS P1 TSL 3 BASIC10.8□□□□□ -0.68
Shisa8J3QNX5 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 60.3 ms