Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Chd3B1AR17 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Gm5982-201ENSMUST00000196234 512 ntBASIC11.64□□□□□ -0.55
Chd3B1AR17 Gm5714-201ENSMUST00000197343 566 ntBASIC11.64□□□□□ -0.55
Chd3B1AR17 Gm45484-201ENSMUST00000210310 1141 ntBASIC11.64□□□□□ -0.55
Chd3B1AR17 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Chd3B1AR17 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Mir8115-201ENSMUST00000184992 119 ntBASIC11.64□□□□□ -0.55
Chd3B1AR17 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Gm45550-201ENSMUST00000209380 946 ntBASIC11.64□□□□□ -0.55
Chd3B1AR17 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC11.64□□□□□ -0.55
Chd3B1AR17 CT030637.1-201ENSMUST00000228016 669 ntBASIC11.64□□□□□ -0.55
Chd3B1AR17 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Gm8146-201ENSMUST00000192106 1847 ntBASIC11.64□□□□□ -0.55
Chd3B1AR17 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Chd3B1AR17 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Chd3B1AR17 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC11.63□□□□□ -0.55
Chd3B1AR17 CT009489.1-201ENSMUST00000227740 1893 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Gm15172-201ENSMUST00000118945 1046 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 Gm15566-201ENSMUST00000121130 590 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Gm21092-201ENSMUST00000178995 955 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 Gm5523-201ENSMUST00000180415 997 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Gm42997-202ENSMUST00000200321 985 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 Gm19287-201ENSMUST00000203190 358 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 AC122876.1-201ENSMUST00000217619 825 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
Chd3B1AR17 AC130671.2-201ENSMUST00000227224 1621 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC11.63□□□□□ -0.55
Chd3B1AR17 Gm11892-201ENSMUST00000117711 1202 ntBASIC11.63□□□□□ -0.55
Chd3B1AR17 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Chd3B1AR17 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms