Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Gm45258-201ENSMUST00000210042 853 ntBASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Pole-202ENSMUST00000112481 1523 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Fthl17b-201ENSMUST00000105006 842 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Gm11521-201ENSMUST00000143302 329 ntTSL 3 BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Gm13201-201ENSMUST00000144031 600 ntTSL 3 BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Gm14817-201ENSMUST00000148522 643 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Gm4960-201ENSMUST00000182928 1001 ntBASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Gm3527-201ENSMUST00000198905 460 ntBASIC15.8■□□□□ 0.12
Scn4aQ9ER60 AC165260.2-201ENSMUST00000225371 395 ntBASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Ankrd45-201ENSMUST00000052245 849 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Cxcl11-201ENSMUST00000077820 1581 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
Scn4aQ9ER60 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Gm9244-201ENSMUST00000056767 2129 ntBASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Gm29101-201ENSMUST00000188329 1471 ntBASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Dync2li1-201ENSMUST00000025101 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Igsf11-202ENSMUST00000114706 1578 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Lime1-202ENSMUST00000108804 960 ntTSL 3 BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Gm15172-201ENSMUST00000118945 1046 ntBASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Gm11770-201ENSMUST00000135048 548 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Gm13780-201ENSMUST00000150482 1187 ntTSL 5 BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Gm13842-202ENSMUST00000156331 865 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Hamp2-203ENSMUST00000217812 437 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 AC102327.1-201ENSMUST00000226389 742 ntBASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Dcpp2-201ENSMUST00000088598 611 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Taar5-201ENSMUST00000092659 1014 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Cenpu-202ENSMUST00000093518 783 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Vcp-rs-201ENSMUST00000120233 2406 ntBASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Kcnk16-202ENSMUST00000225596 2127 ntBASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Npl-201ENSMUST00000041874 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Scn4aQ9ER60 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Gm5171-201ENSMUST00000214944 1415 ntBASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Gm24161-201ENSMUST00000104592 130 ntBASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Scp2-202ENSMUST00000106701 772 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Gm9578-201ENSMUST00000182354 753 ntBASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Adh6-ps1-202ENSMUST00000196293 754 ntBASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Gm5424-201ENSMUST00000053865 1240 ntBASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Nmrk2-201ENSMUST00000005069 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Epha6-203ENSMUST00000161358 1356 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 4930579F01Rik-201ENSMUST00000012186 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Amd-ps3-201ENSMUST00000072796 1496 ntBASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Zfand4-210ENSMUST00000223495 1751 ntTSL 5 BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Scn4aQ9ER60 1700071K01Rik-201ENSMUST00000117522 819 ntBASIC15.78■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms