Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Gm26286-201ENSMUST00000104166 134 ntBASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Gm12715-201ENSMUST00000121430 1128 ntBASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Gm26361-201ENSMUST00000158868 186 ntBASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Gm19287-201ENSMUST00000203190 358 ntBASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ddx56Q9D0R4 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Ddx56Q9D0R4 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC12.52□□□□□ -0.4
Ddx56Q9D0R4 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
Ddx56Q9D0R4 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Ddx56Q9D0R4 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Ddx56Q9D0R4 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Ddx56Q9D0R4 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC12.52□□□□□ -0.4
Ddx56Q9D0R4 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC12.52□□□□□ -0.4
Ddx56Q9D0R4 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Ddx56Q9D0R4 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.4
Ddx56Q9D0R4 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Ddx56Q9D0R4 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Gm28719-201ENSMUST00000187779 1757 ntBASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Gm22133-201ENSMUST00000102082 109 ntBASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 AC121960.1-201ENSMUST00000227982 564 ntBASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Ddx56Q9D0R4 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 AC173482.6-201ENSMUST00000225889 1741 ntBASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Gm15004-201ENSMUST00000119192 630 ntBASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Gm9192-201ENSMUST00000183221 985 ntBASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Ighv5-7-201ENSMUST00000192302 244 ntBASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Ddx56Q9D0R4 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms