Protein–RNA interactions for Protein: Q8C9S8

Atg4a, Cysteine protease ATG4A, mousemouse

Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4aQ8C9S8 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Atg4aQ8C9S8 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Gm8566-201ENSMUST00000120174 465 ntBASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Gm18212-201ENSMUST00000211678 889 ntBASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Gm9176-201ENSMUST00000219955 1120 ntBASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Mir219a-1-201ENSMUST00000083621 110 ntBASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Atg4aQ8C9S8 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Gm23200-201ENSMUST00000104379 132 ntBASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Gm15515-201ENSMUST00000117827 822 ntBASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Gm12201-201ENSMUST00000120657 1234 ntBASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Gm24990-201ENSMUST00000157406 323 ntBASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 H2-Q3-201ENSMUST00000172583 608 ntBASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Gm16505-201ENSMUST00000179981 232 ntBASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Gm2553-201ENSMUST00000215986 605 ntBASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Rubie-203ENSMUST00000227803 2430 ntBASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC14.41□□□□□ -0.1
Atg4aQ8C9S8 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Gm14028-201ENSMUST00000117434 479 ntBASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Gm16481-201ENSMUST00000119074 1227 ntBASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Gm12997-201ENSMUST00000120207 640 ntBASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Gm5982-201ENSMUST00000196234 512 ntBASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 AC151275.1-201ENSMUST00000224870 585 ntBASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Lect2-202ENSMUST00000225183 823 ntBASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 AC133602.1-201ENSMUST00000227510 509 ntBASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Gm43984-201ENSMUST00000204572 2864 ntBASIC14.4□□□□□ -0.1
Atg4aQ8C9S8 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC14.4□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms