Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm28441-201ENSMUST00000190927 1343 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Rnf40Q3U319 AC160863.4-201ENSMUST00000218099 1334 ntTSL 5 BASIC12.59□□□□□ -0.39
Rnf40Q3U319 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Rnf40Q3U319 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Rnf40Q3U319 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Rnf40Q3U319 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Rnf40Q3U319 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Rnf40Q3U319 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Rnf40Q3U319 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC12.59□□□□□ -0.39
Rnf40Q3U319 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Rnf40Q3U319 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
Rnf40Q3U319 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.39
Rnf40Q3U319 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Rnf40Q3U319 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Plekhg4-203ENSMUST00000160191 3339 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Rnf40Q3U319 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Mir449b-201ENSMUST00000104833 80 ntBASIC12.58□□□□□ -0.4
Rnf40Q3U319 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Fhdc1-202ENSMUST00000107689 5918 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC12.58□□□□□ -0.4
Rnf40Q3U319 Gm15719-201ENSMUST00000120619 635 ntBASIC12.58□□□□□ -0.4
Rnf40Q3U319 Gm12416-201ENSMUST00000120911 1008 ntBASIC12.58□□□□□ -0.4
Rnf40Q3U319 Gm14905-201ENSMUST00000122351 639 ntBASIC12.58□□□□□ -0.4
Rnf40Q3U319 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Sox5os1-201ENSMUST00000156994 1585 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Vmn1r-ps28-201ENSMUST00000174767 942 ntBASIC12.58□□□□□ -0.4
Rnf40Q3U319 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 B230112G18Rik-201ENSMUST00000192979 851 ntBASIC12.58□□□□□ -0.4
Rnf40Q3U319 Gm6560-201ENSMUST00000198588 1591 ntBASIC12.58□□□□□ -0.4
Rnf40Q3U319 Olfr163-ps1-201ENSMUST00000205891 940 ntBASIC12.58□□□□□ -0.4
Rnf40Q3U319 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Clec4a2-201ENSMUST00000032248 1261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Klrc2-201ENSMUST00000071920 1098 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Olfr1277-201ENSMUST00000099619 962 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Rnf40Q3U319 CAAA01216754.1-201ENSMUST00000215882 1836 ntBASIC12.58□□□□□ -0.4
Rnf40Q3U319 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Pls3-201ENSMUST00000033547 3242 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Tyk2-203ENSMUST00000214454 4770 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm10488-201ENSMUST00000101657 874 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm7113-201ENSMUST00000120477 958 ntBASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm15597-201ENSMUST00000145924 1050 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 4930486I03Rik-201ENSMUST00000161509 788 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm6121-202ENSMUST00000167438 893 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Vmn1r-ps17-201ENSMUST00000175797 894 ntBASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm20778-201ENSMUST00000178524 627 ntBASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm4836-201ENSMUST00000179874 907 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm10096-202ENSMUST00000180207 907 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm10487-202ENSMUST00000180344 907 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm26763-201ENSMUST00000180968 1093 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC12.57□□□□□ -0.4
Rnf40Q3U319 4930440C22Rik-202ENSMUST00000190754 512 ntTSL 3 BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm37171-201ENSMUST00000192636 1185 ntBASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm38294-201ENSMUST00000192831 381 ntBASIC12.57□□□□□ -0.4
Rnf40Q3U319 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC12.57□□□□□ -0.4
Rnf40Q3U319 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC12.57□□□□□ -0.4
Rnf40Q3U319 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.57□□□□□ -0.4
Rnf40Q3U319 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm10058-201ENSMUST00000079797 893 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC12.57□□□□□ -0.4
Rnf40Q3U319 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC12.57□□□□□ -0.4
Rnf40Q3U319 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Rnf40Q3U319 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC12.57□□□□□ -0.4
Rnf40Q3U319 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 69.2 ms