Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Col28a1Q2UY11 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.55
Col28a1Q2UY11 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Col28a1Q2UY11 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Gm3756-201ENSMUST00000169182 1355 ntBASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Gm15172-201ENSMUST00000118945 1046 ntBASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Gm11591-201ENSMUST00000120063 702 ntBASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Gm8018-201ENSMUST00000173536 789 ntBASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Gm43068-201ENSMUST00000201095 1273 ntBASIC11.58□□□□□ -0.56
Col28a1Q2UY11 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 AC108416.1-202ENSMUST00000228927 1201 ntBASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Asic5-201ENSMUST00000029641 1657 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Cep97-203ENSMUST00000118500 3389 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Col28a1Q2UY11 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Gm8228-201ENSMUST00000189949 2192 ntBASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Gm37827-201ENSMUST00000194486 1542 ntBASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Gm43447-201ENSMUST00000198471 1535 ntBASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Gm24830-201ENSMUST00000102024 166 ntBASIC11.57□□□□□ -0.56
Col28a1Q2UY11 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Gm4986-201ENSMUST00000119731 549 ntBASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Gm7809-201ENSMUST00000153199 742 ntBASIC11.57□□□□□ -0.56
Col28a1Q2UY11 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Gm20482-202ENSMUST00000174729 825 ntBASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Gm2383-201ENSMUST00000181461 807 ntBASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Gm7046-201ENSMUST00000221351 977 ntBASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Gm26232-201ENSMUST00000083360 166 ntBASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Rnu1b6-201ENSMUST00000083839 166 ntBASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Col28a1Q2UY11 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Col28a1Q2UY11 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms