Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col6a1Q04857 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Col6a1Q04857 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col6a1Q04857 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC13.19□□□□□ -0.3
Col6a1Q04857 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Col6a1Q04857 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC13.18□□□□□ -0.3
Col6a1Q04857 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Col6a1Q04857 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 n-R5s64-201ENSMUST00000102019 119 ntBASIC13.18□□□□□ -0.3
Col6a1Q04857 Gm14193-201ENSMUST00000105067 153 ntBASIC13.18□□□□□ -0.3
Col6a1Q04857 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Gm15566-201ENSMUST00000121130 590 ntBASIC13.18□□□□□ -0.3
Col6a1Q04857 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC13.18□□□□□ -0.3
Col6a1Q04857 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC13.18□□□□□ -0.3
Col6a1Q04857 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC13.18□□□□□ -0.3
Col6a1Q04857 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Col6a1Q04857 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Ighv5-11-201ENSMUST00000193354 371 ntBASIC13.18□□□□□ -0.3
Col6a1Q04857 Gm37458-201ENSMUST00000194055 410 ntBASIC13.18□□□□□ -0.3
Col6a1Q04857 Gm44270-201ENSMUST00000203084 1234 ntBASIC13.18□□□□□ -0.3
Col6a1Q04857 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC13.18□□□□□ -0.3
Col6a1Q04857 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC13.18□□□□□ -0.3
Col6a1Q04857 Arhgef33-207ENSMUST00000224966 490 ntBASIC13.18□□□□□ -0.3
Col6a1Q04857 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Col6a1Q04857 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Gm37859-201ENSMUST00000195529 2173 ntBASIC13.18□□□□□ -0.3
Col6a1Q04857 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC13.18□□□□□ -0.3
Col6a1Q04857 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Col6a1Q04857 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Col6a1Q04857 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC13.17□□□□□ -0.3
Col6a1Q04857 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC13.17□□□□□ -0.3
Col6a1Q04857 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC13.17□□□□□ -0.3
Col6a1Q04857 Gm4654-201ENSMUST00000183305 982 ntBASIC13.17□□□□□ -0.3
Col6a1Q04857 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC13.17□□□□□ -0.3
Col6a1Q04857 CT485606.1-201ENSMUST00000213187 878 ntBASIC13.17□□□□□ -0.3
Col6a1Q04857 Gm9797-202ENSMUST00000218003 294 ntBASIC13.17□□□□□ -0.3
Col6a1Q04857 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC13.17□□□□□ -0.3
Col6a1Q04857 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col6a1Q04857 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col6a1Q04857 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col6a1Q04857 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col6a1Q04857 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col6a1Q04857 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Col6a1Q04857 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Col6a1Q04857 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Col6a1Q04857 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms